苹果5S5s序列号查询激活日期期 序列号C39LLFJ2FFDR
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时间：2015-07-29 23:11
9633616.br
gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos
latent virus]
53proteins
Coat protein
372 letters
BLASTP 2.2.9 [May-01-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",
Nucleic Acids Res. 25:.
Query= gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos
latent virus]
(372 letters)
Database: SSRNAp
,368 total letters
Sequences producing significant alignments:
(bits) Value
gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos la...
gi||ref|NP_| coat protein, p40 [Pelargonium necr...
gi||ref|NP_| coat protein [Cymbidium ringspot vi...
gi|9629513|ref|NP_| capsid protein [Galinsoga mosaic virus]
gi|9790331|ref|NP_| p41 capsid protein [Tomato bushy stu...
gi||ref|NP_| coat protein CP [Pear latent virus]
gi|9625554|ref|NP_| coat protein of 41 kDa [Artichoke mo...
gi||ref|NP_| capsid protein [Carnation Italian r...
gi|9626674|ref|NP_| coat protein [Cucumber necrosis virus]
gi||ref|NP_| coat protein [Cucumber Bulgarian vi...
gi||ref|NP_| coat protein [Johnsongrass chloroti...
gi|9626977|ref|NP_| capsid protein [Melon necrotic spot ...
gi||ref|NP_| coat protein [Hibiscus chlorotic ri...
gi||ref|NP_| coat protein [Pea stem necrosis virus]
gi||ref|NP_| p37K protein [Carnation ringspot vi...
gi||ref|NP_| capsid protein [Red clover necrotic...
gi||ref|NP_| coat protein (p48) [Oat chlorotic s...
gi||ref|NP_| capsid protein [Sweet clover necrot...
gi|9634678|ref|NP_| capsid protein (p38) [Japanese iris ...
gi||ref|NP_| capsid [Cowpea mottle virus]
gi|9629190|ref|NP_| capsid protein [Saguaro cactus virus]
gi|9633807|ref|NP_| coat protein [Carnation mottle virus]
gi||ref|NP_| coat protein [Pelargonium flower br...
gi||ref|NP_| coat protein [Turnip crinkle virus]
gi|9627424|ref|NP_| coat protein [Cardamine chlorotic fl...
gi||ref|NP_| coat protein [Southern bean mosaic ...
gi||ref|NP_| coat protein [Sesbania mosaic virus]
gi|9629187|ref|NP_| coat protein [Tobacco necrosis virus A]
gi|9628595|ref|NP_| viral coat protein [Lucerne transien...
gi|9627903|ref|NP_| coat protein [Southern cowpea mosaic...
gi||ref|NP_| coat protein [Subterranean clover m...
gi||ref|NP_| coat protein [Beet black scorch virus]
gi|9628879|ref|NP_| capsid protein [Olive latent virus 1]
gi||ref|NP_| coat protein [Sclerophthora macrosp...
gi||ref|NP_| coat protein [Turnip rosette virus]
gi||ref|NP_| 29 kDa coat protein [Tobacco necros...
gi|9629523|ref|NP_| capsid protein [Leek white stripe vi...
gi||ref|NP_| 26 kDa capsid protein [Panicum mosa...
gi||ref|NP_| CP readthrough product [Soybean dwa...
gi||ref|NP_| coat protein [Soybean dwarf virus]
# >gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos latent virus]
Length = 372
740 bits (1910), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILH 60
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILH
# Sbjct: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILH 60
# Query: 61
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY 120
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY
# Sbjct: 61
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY 120
# Query: 121 RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR 180
RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR
# Sbjct: 121 RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR 180
# Query: 181 VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV 240
VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV
# Sbjct: 181 VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV 240
# Query: 241 GDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLA 300
GDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLA
# Sbjct: 241 GDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLA 300
# Query: 301 LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFGNYTLQV 360
LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFGNYTLQV
# Sbjct: 301 LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFGNYTLQV 360
# Query: 361 TRAKISNNATLI 372
TRAKISNNATLI
# Sbjct: 361 TRAKISNNATLI 372
# >gi||ref|NP_| coat protein, p40 [Pelargonium necrotic spot virus]
Length = 378
462 bits (1188), Expect = e-129
Identities = 226/379 (59%), Positives = 279/379 (73%), Gaps = 8/379 (2%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLG-------RSK 53
G +M SP G +L W G++WV
# Sbjct: 1
MALVRRNNNSNMVAVPAARATGAAIGSMMFSPTGAKLFWTGMDWVLDKTWQKIKNQFKSR 60
# Query: 54
KSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNG 113
PGAIAAPVA TR+IR SKPKFTRSKG+VTI HREL+GQ+NNS+GLVVNG
# Sbjct: 61
KTDMILHPGAYPGAIAAPVAVTRVIRGSKPKFTRSKGAVTITHRELVGQYNNSAGLVVNG 120
# Query: 114 GVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQ 173
V G +Y++NPSN ++FPWLQ IA++FDQYKFD V+L Y+PMCATTETGRVA+YFDKD Q
# Sbjct: 121 SVGGTIYKLNPSNALLFPWLQSIASNFDQYKFDNVKLTYIPMCATTETGRVALYFDKDSQ 180
# Query: 174 DVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG 233
PADR+ELANM H
E+APW ES LNVP DNVKRF NDNTTTD KLVDLGQIG+AT+G
# Sbjct: 181 DPVPADRMELANMFHLRETAPWAESNLNVPTDNVKRFTNDNTTTDLKLVDLGQIGIATFG 240
# Query: 234 GGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRG 293
TNPVGDLFIHYT+T FEPQP A +VETEQ+GAGA
+A +T+I F+
# Sbjct: 241 GSGTNPVGDLFIHYTVTFFEPQPSAGIVETEQTGAGALDSGPDMVSVGGDAISTLIVFKT 300
# Query: 294 PGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLF 353
QSI N+T + PGG + YNGT F
# Sbjct: 301 PGTFILTLDSVIPPWGLLVPT-GVTVNSSTHAQATGFCQSIVNLTVSTPGGILQYNGTGF 359
# Query: 354 GNYTLQVTRAKISNNATLI 372
GN T+ + RAK++N
# Sbjct: 360 GNRTVNIVRAKVTNRVDII 378
# >gi||ref|NP_| coat protein [Cymbidium ringspot virus]
Length = 380
441 bits (1133), Expect = e-122
Identities = 222/383 (57%), Positives = 283/383 (73%), Gaps = 14/383 (3%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWV----------RRKLG 50
# Sbjct: 1
MAMTTTNNNRAM--TRAAKQALPALGALATSGMGQQLFMSGVNYAIEKGKQFVPNRRGGK 58
# Query: 51
RSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLV 110
+++ +D++ HPG L G++AAPVA +RI+R SKP+F RSKGSVTI HREL+GQFN+SS LV
# Sbjct: 59
KNRNTDMVAHPGALSGSMAAPVAISRIVRGSKPRFIRSKGSVTITHRELVGQFNSSSALV 118
# Query: 111 VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDK 170
VNGG++GNLY+INP+N V+FPWLQ +A++FDQY F+ ++LQYVPMCA+TETGRVAIYFDK
# Sbjct: 119 VNGGITGNLYKINPANAVLFPWLQTLASNFDQYMFNTLRLQYVPMCASTETGRVAIYFDK 178
# Query: 171 DQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLA 230
D QD+EP DR+ELANM H TE+APWCE +L VPVD+VKRFMNDN+T D KL+DLGQ+GLA
# Sbjct: 179 DSQDLEPVDRIELANMRHLTETAPWCEGSLRVPVDSVKRFMNDNSTVDPKLIDLGQVGLA 238
# Query: 231 TYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIIT 290
TN VGDLFIHYT+T +EPQP + L
LV V++ ATTT +T
# Sbjct: 239 TYGGPGTNAVGDLFIHYTVTFYEPQPSSGLTSTLQTGTGSANAGPTLVAVATTATTTTVT 298
# Query: 291 FRGPGVYLLALSQRAASFTTLVTAGGAVVNSHT-TLFSGPAYQSIANITATIPGGSITYN 349
FR PG YL+++ QRA +FT
# Sbjct: 299 FRSPGTYLVSMVQRATTFTG-VTPIALTFNSNTNTTAAGTNYSANYNVTVPVPGAQMRFV 357
# Query: 350 GTLFGNYTLQVTRAKISNNATLI 372
GT FGNYTLQVTRAKI+N ATL+
# Sbjct: 358 GTGFGNYTLQVTRAKITNAATLL 380
# >gi|9629513|ref|NP_| capsid protein [Galinsoga mosaic virus]
Length = 340
327 bits (839), Expect = 1e-88
Identities = 170/352 (48%), Positives = 226/352 (64%), Gaps = 14/352 (3%)
# Query: 23
VKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASK 82
+APVA +R +R S
# Sbjct: 1
MKTTQPKTKPSGSPLADNNKSYRSNRTNKQKTQDQ-----------SAPVAISRQVRGSV 49
# Query: 83
PKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQ 142
VNGGV GNLYR+NP+N
# Sbjct: 50
PKLAGNR-PFTFGHRELIATISNTVLFQVNGGVGGNLYRLNPANSSLFTWLPSISANFDQ 108
# Query: 143 YKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNV 202
Y+F +V L+Y P C+TTE GRV +YFDKD QD EP DRVELAN GH +E+
# Sbjct: 109 YRFLKVWLEYAPFCSTTEAGRVGLYFDKDSQDPEPTDRVELANFGHLSETVAWSPIELHL 168
# Query: 203 PVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVE 262
P DNV R+M+D++ +D KL+DLGQIG ATYGGGSTN +GDLFIHYTI L +PQP
# Sbjct: 169 PTDNVVRYMSDSSVSDPKLIDLGQIGFATYGGGSTNAIGDLFIHYTIELQQPQPTYFAVQ 228
# Query: 263 TEQSGAGAAPFGTNLVTV-SSNATTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNS 321
T+T +TFR PG YL+ L QR+ +FT++V
# Sbjct: 229 TLQSGNGSSSAGPTVAAVTASTGTSTTLTFRSPGTYLVNLFQRSLTFTSIVATGGTVINS 288
# Query: 322 HTTLFSG-PAYQSIANITATIPGGSITYNGTLFGNYTLQVTRAKISNNATLI 372
N+T + PGG++
# Sbjct: 289 QATLQSGATAYCSQHNVTVSTPGGALVATGTGFGNYNFQVTRARVQNRCDLL 340
# >gi|9790331|ref|NP_| p41 capsid protein [Tomato bushy stunt virus]
Length = 388
310 bits (793), Expect = 3e-83
Identities = 175/388 (45%), Positives = 235/388 (60%), Gaps = 16/388 (4%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAG------QVMLSPAGRELIWNGVNWVRR-----KL 49
# Sbjct: 1
MAMVKRNNNTGMIPVSTKQLLALGAAAGATALQGFVKNNGMAIVEGAVDLTKRAYKAVRR 60
# Query: 50
GRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSSG 108
GAI APVA TR +
SKPKFT R+ GSVT+ HRE L Q NNS+G
# Sbjct: 61
RGGKKQQMINHVGGTGGAIMAPVAVTRQLVGSKPKFTGRTSGSVTVTHREYLSQVNNSTG 120
# Query: 109 LVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYF 168
VNGG+ GNL ++NP N
IA++FDQY F+ V L YVP+C+TTE GRVAIYF
# Sbjct: 121 FQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYTFNSVVLHYVPLCSTTEVGRVAIYF 180
# Query: 169 DKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIG 228
DKD +D EPADRVELAN
E+APW E+ L VP D +KRF +D++T+D KL+DLGQ+G
# Sbjct: 181 DKDSEDPEPADRVELANYSVLKETAPWAEAMLRVPTDKIKRFCDDSSTSDHKLIDLGQLG 240
# Query: 229 LATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNAT 285
TN VGD+FI Y++TL+ PQP
# Sbjct: 241 IATYGGAGTNAVGDIFISYSVTLYFPQPTNTLLSTRRLDLAGALVTASGPGYLLVSRTAT 300
# Query: 286 TTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFS-GPAYQSIANITATIPGG 344
G ++++ + R
VNS T + + G
# Sbjct: 301 VLTMTFRATGTFVISGTYRCLTATTLGLAGGVNVNSITVVDNIGTDSAFFINCTVSNLPS 360
# Query: 345 SITYNGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 361 VVTFTSTGITSATVHCVRATRQNDVSLI 388
# >gi||ref|NP_| coat protein CP [Pear latent virus]
Length = 388
300 bits (769), Expect = 2e-80
Identities = 171/389 (43%), Positives = 232/389 (59%), Gaps = 18/389 (4%)
# Query: 1
MALVKRNNNMAL------IATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLG--RS 52
M +V+RNNN A+
# Sbjct: 1
MEIVRRNNNSAIAINKKQLATMAATAAAGALSNYVKNN-GAMVVQGAVNMGKKAYGAVRN 59
# Query: 53
KK----SDVILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSS 107
++H G + GA+ APVA +R +
R+ GSVT+ HRE L Q NNSS
# Sbjct: 60
RKNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSVTVTHREYLTQVNNSS 119
# Query: 108 GLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIY 167
NGG+ GNL ++NP N
IA++FDQY F+ V L YVP+C T E GRVA+Y
# Sbjct: 120 AFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVVLHYVPLCGTNEVGRVAMY 179
# Query: 168 FDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQI 227
+DKD +D EPADRVELAN G
E+APW E+ L VP D +KR+ +D+T
DRKL+DLGQ+
# Sbjct: 180 WDKDSEDPEPADRVELANFGILKETAPWAEAILRVPTDKMKRYCDDSTVVDRKLIDLGQL 239
# Query: 228 GLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNA 284
TNPVGD+F+ Y++TL+ PQP
# Sbjct: 240 GISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLSLTGALEASTGPGYINVTRTP 299
# Query: 285 TTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTL-FSGPAYQSIANITATIPG 343
# Sbjct: 300 TLLTITFRSTGTFLLSGVFRDTGVAVLGVTGGIGINSQTTLDVVGVATSFLVNCTVSTLP 359
# Query: 344 GSITYNGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 360 ATLTYGSAGITSVTANCTRATRANTVTLL 388
# >gi|9625554|ref|NP_| coat protein of 41 kDa [Artichoke mottled crinkle virus]
Length = 388
296 bits (759), Expect = 3e-79
Identities = 170/388 (43%), Positives = 229/388 (59%), Gaps = 16/388 (4%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAG------QVMLSPAGRELIWNGVNWVRR-----KL 49
# Sbjct: 1
MAMVKRNNNTGLIPVSTKQLMALGAAAGASALQGFVRNNGAAIVGKVVDVGQKVYKAVKK 60
# Query: 50
GRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSSG 108
GAI APVA TR +
SKPKFT ++ GSVT+ HRE L Q N S+G
# Sbjct: 61
RGGKKQQQIKHVGGTGGAIMAPVAVTRQLTGSKPKFTGKTSGSVTVTHREYLSQVNMSTG 120
# Query: 109 LVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYF 168
VNGG+ GNL ++NP N
IA++FDQY F+ V L YVP+CATTE GRVA+YF
# Sbjct: 121 FQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYSFNSVLLHYVPLCATTEVGRVAMYF 180
# Query: 169 DKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIG 228
DKD +D EPADRVELAN
L VP D +KRF +D++T D KL+DLGQ+G
# Sbjct: 181 DKDSEDPEPADRVELANYSVLAETAPWAERALWVPTDRIKRFCDDSSTLDHKLIDLGQLG 240
# Query: 229 LATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNAT 285
TN VGD+FI Y++TL+ PQP
# Sbjct: 241 VATYGGAGTNAVGDIFISYSVTLYFPQPTNTLLSTRRLDLAGTPVTASGPGYILLTRTPT 300
# Query: 286 TTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFS-GPAYQSIANITATIPGG 344
G ++++ + R
VNS T + + G +
# Sbjct: 301 VLTMTFRATGTFVISGAYRCLTSTVLGLTGGVNVNSITVVDNVGTSSSFFINCTVSNLPS 360
# Query: 345 SITYNGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 361 VITFTTTGITSATIQCNRATRQNDVSLI 388
# >gi||ref|NP_| capsid protein [Carnation Italian ringspot virus]
Length = 386
281 bits (719), Expect = 1e-74
Identities = 152/322 (47%), Positives = 209/322 (64%), Gaps = 7/322 (2%)
# Query: 58
ILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSSGLVVNGGVS 116
I+H G + GAI APVA TR +R SKPKF+ R+ GSVT++HREL+ Q NNS+
# Sbjct: 65
IVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSHRELITQVNNSTQFVVNGGVT 124
# Query: 117 GNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVE 176
GNL ++NP N
IAA+FDQY F+ V L YVP+CATTETGRVA+YFDKD +D+E
# Sbjct: 125 GNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPLCATTETGRVAMYFDKDSEDLE 184
# Query: 177 PADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGS 236
L +P D +KR+ +D++
DRKL+DLGQIG+ATYGG
# Sbjct: 185 PADRVELANYATLKGNCTMGRGMLRIPTDRIKRYNDDSSVNDRKLIDLGQIGIATYGGSG 244
# Query: 237 TNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNATTTIITFRG 293
TNPVGD+FI Y++TL
PQP A+ V+T +
# Sbjct: 245 TNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLDTNVGPSYTITSSTATVYTVAFRT 304
# Query: 294 PGVYLLALSQRAASFTTL-VTAGGAVVNSHTTL-FSGPAYQSIANITATIPGGSITYNGT 351
# Sbjct: 305 VGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTAGTAFSYMTNVTVSALPASITFTVV 364
# Query: 352 -LFGNYTLQVTRAKISNNATLI 372
# Sbjct: 365 GVITSSTSHAVRASRTNNADMI 386
# >gi|9626674|ref|NP_| coat protein [Cucumber necrosis virus]
Length = 380
252 bits (644), Expect = 6e-66
Identities = 150/384 (39%), Positives = 213/384 (55%), Gaps = 17/384 (4%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSD---- 56
MALV RNNNM
+E IWNGV W+
# Sbjct: 1
MALVSRNNNMRTLAKLAAPLATAGTRTIV---DNKEAIWNGVKWIWGKLPKGKKGKNGNG 57
# Query: 57
-VILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSG--LVVNG 113
+KGSV I HRE +
# Sbjct: 58
ALIAHPQAFPGAIAAPISYAYAVKGRKPRFQTAKGSVRITHREYVSVLSGTNGEFLRNNG 117
# Query: 114 GVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQ 173
N + INP NP +FPWL
IAA+FDQYKF+ ++ +YVP+
GRVA+YFDKD +
# Sbjct: 118 TGPNNDFSINPLNPFLFPWLVNIAANFDQYKFNSLRFEYVPLVNTTTNGRVALYFDKDSE 177
# Query: 174 DVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG 233
+ L VP DNVKRF++D ++ D KL++LGQ G
# Sbjct: 178 DPGPDDRAALANYAHLSEISPWAITKLTVPTDNVKRFISDTSSGDPKLINLGQFGWVAY- 236
# Query: 234 GGSTNPVGDLFIHYTITLFEPQPLASLVET---EQSGAGAAPFGTNLVTVS-SNATTTII 289
+GD+F+ YT+ LFE QP + L+E+
# Sbjct: 237 SGPTAELGDIFVEYTVDLFEAQPTSPLLESLFRESASSVQTRMGLPYFSLEVASATDLVW 296
# Query: 290 TFRGPGVYLLA-LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITY 348
# Sbjct: 297 QARVPGTYVVTIIFNSTVGGLTPSISGGGTINSSFSVSTAGSSAYVANITIRVNANLSLS 356
# Query: 349 NGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 357 GLTGATNAQLFAVRA-ITENAVQV 379
# >gi||ref|NP_| coat protein [Cucumber Bulgarian virus]
Length = 380
252 bits (643), Expect = 8e-66
Identities = 140/359 (38%), Positives = 202/359 (56%), Gaps = 18/359 (5%)
# Query: 10
MALIATEAGKLA-----AVKAGQVMLSPAGRELIWNGVNWVRRKLG-RSKKSDVILHP-- 61
R++I++G+NW+
# Sbjct: 1
MALVLRKAGNIVPYVGPAAKAGATAVYN-NRKIIYDGLNWIYAKVSKRVKKKNGIMSNVV 59
# Query: 62
GVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSG--LVVNGGVSGNL 119
PG+I APVA +R +RAS+PKF R++G V I HRE + Q N
# Sbjct: 60
GASPGSIVAPVATSRQLRASRPKFMRTRGGVNITHREYVTQVNGVNGGTFQLNRTFGPGA 119
# Query: 120 YRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPAD 179
IA++FD+YKF R+
YVPMCATTE GRV ++FD+D +D
# Sbjct: 120 YRVNPTNAAVFPWLLNIASNFDKYKFTRLSFHYVPMCATTEVGRVGLFFDRDSEDSGPFD 179
# Query: 180 RVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNP 239
L VP D++ RF++D+T TD KL+DLG+ G
# Sbjct: 180 RSEVANMAHLAETPPWGEVVLQVPCDSIDRFISDSTVTDTKLIDLGRFGYVVYGGSTNNA 239
# Query: 240 VGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGT---NLVTVSSNATTTIITFRGPGV 296
GD+F+ YT+ L EPQP ++ +E
# Sbjct: 240 YGDVFVQYTVELREPQPSSNTMEEITGNAGNSVVTTPPSYFRLASFDATLAAFTPTTAGT 299
# Query: 297 YLLALSQRAASFT----TLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGT 351
+ A+ PG ++ +N T
# Sbjct: 300 YLVTLILEGTAMTAGNISTSNPSALTITGQSVVVSATKVIYVCQVIASTPGHNLNFNFT 358
# >gi||ref|NP_| coat protein [Johnsongrass chlorotic stripe mosaic virus]
Length = 364
222 bits (565), Expect = 8e-57
Identities = 115/228 (50%), Positives = 147/228 (64%), Gaps = 3/228 (1%)
# Query: 44
WVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQF 103
G +AAPVA +R IR+ KPKFT
KG V + HRE + Q
# Sbjct: 28
WNRLRKRMTNGGGVPMIVGSGGGTVAAPVAVSRQIRSRKPKFTSVKGQVRVTHREYVTQV 87
# Query: 104 NN-SSGLV-VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTET 161
IA++FDQY+F
+QL YVP+CATTE
# Sbjct: 88
SGVGSGLFQLNGGLPSGQFRVNPNNAACFPWLLSIASNFDQYRFVNLQLCYVPLCATTEV 147
# Query: 162 GRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKL 221
GRVA+++DKD
P +R ELANM H
E+ PW E +L VP DNVKR++ND+
# Sbjct: 148 GRVALFYDKDSGDSGPFERAELANMTHCAETPPWAEVSLTVPCDNVKRYLNDSNVTDLKL 207
# Query: 222 VDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAG 269
VD G+ G A Y GG+ N
GDLFI YT+ L EPQP A L+
# Sbjct: 208 VDAGRFGYAVY-GGNANTYGDLFIQYTVELSEPQPTAGLIGEVXGNAG 254
# >gi|9626977|ref|NP_| capsid protein [Melon necrotic spot virus]
Length = 390
212 bits (540), Expect = 7e-54
Identities = 134/369 (36%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVR------RKLGRSKK 54
MA+VKR NN+
# Sbjct: 1
MAMVKRINNLPTV-----KLAK----QALPLLANPKLVNKAIDVVPLVVQGGRKLSKAAK 51
# Query: 55
-------SDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSS 107
PGAI+APVA +R +
KP+F RS+GSV I HRE +
# Sbjct: 52
RLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFIASVLPSS 111
# Query: 108 GLVVNGG-VSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAI 166
+D Y+F R+++ Y+P
# Sbjct: 112 DLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGSTSTGRVSL 171
# Query: 167 YFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQ 226
+SAPW E+ L VP DN
# Sbjct: 172 LWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQ 231
# Query: 227 IGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATT 286
# Sbjct: 232 FLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGSTIKGVNYIADR 291
# Query: 287 TIITFRG--------PGVYLLALSQRAASFTTLVTAGGA--VVNSHTTLFSGPAYQSIAN 336
# Sbjct: 292 DVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLTSSGASALTFTL 351
# Query: 337 ITATIPGGS 345
# Sbjct: 352 NSTGVPNSS 360
# >gi||ref|NP_| coat protein [Hibiscus chlorotic ringspot virus]
Length = 345
155 bits (391), Expect = 1e-36
Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 13/281 (4%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNP 127
SVT+ H E +G
# Sbjct: 60
VTAPVAASMRTRNPGANIRTAGKSVTVVHCEFVGNIARQTG----SGLLVVERTINPSNV 115
# Query: 128 VVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMG 187
+ L+Y P CATT
G+V + FDKD
# Sbjct: 116 LSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADASPTSKSDMYNHD 175
# Query: 188 HWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG--GGSTNPVGDLFI 245
+ L +P DNV RF+ND++++D KLVD G++ +A YG
# Sbjct: 176 GAVGVSPWDSAMLQIPCDNVDRFINDSSSSDPKLVDFGKVVVANYGQSEGDVDVIGELFL 235
# Query: 246 HYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLALSQRA 305
# Sbjct: 236 QYSITLKIPQGMAT---PTQSGVGISSVGPSLFRVQLRDDTHVFTCNGTGRFLFFFNSTV 292
# Query: 306 ASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSI 346
# Sbjct: 293 DATSTI--AGMEVKQKSSTDDKGET--TIMELLATESGGTI 329
# >gi||ref|NP_| coat protein [Pea stem necrosis virus]
Length = 351
154 bits (390), Expect = 2e-36
Identities = 86/243 (35%), Positives = 128/243 (52%), Gaps = 6/243 (2%)
# Query: 83
PKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGV-SGNLYRINPSNPVVFPWLQGIAASFD 141
S +++RINPSN
# Sbjct: 42
PCYHSRNSNTVVTHREYVTDVSNSSGVFVNNSSGSSSVFRINPSNTRVFNWLSSIAGSYD 101
# Query: 142 QYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLN 201
GR+ + +D D QDV
+E + W +S L
# Sbjct: 102 SYKFTRVRFTYVPYAGSNTPGRLYLGWDADSQDVIQPDRASLANFSPTSEDSVWTDSYLV 161
# Query: 202 VPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLV 261
+ RKLVDLGQ+ LAT+GG
G++++ Y++ L +PQP +
# Sbjct: 162 IPVDREWRFVDDTNISSRKLVDLGQLVLATWGGVDNTVCGEVYVEYSVELRQPQPPSGFV 221
# Query: 262 ETEQSGAG-----AAPFGTNLVTVSSNATTTIITFRGPGVYLLALSQRAASFTTLVTAGG 316
# Sbjct: 222 QVGRVDVPGILTFTGPAFVPASDLSISDTSFSFNLNTAGQYALSIDLQATTSGTLTVAGN 281
# Query: 317 AVV 319
# Sbjct: 282 CTL 284
# >gi||ref|NP_| p37K protein [Carnation ringspot virus]
Length = 345
149 bits (375), Expect = 9e-35
Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 16/308 (5%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGV-SGNLYRINPSN 126
KG + ++ R+L
VVN G+ + +L
# Sbjct: 28
VKIPYATTQIVTTSNPP---KKGQIKVSGRQLFMSLITSSSFVVNNGLPTPSLLSLNPSN 84
# Query: 127 PVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANM 186
AA++D Y+F +++L YV
T +GRV++ +D+D QDV P
# Sbjct: 85
QYLFPSLAYEAANYDLYRFAKLRLSYVHDTNATVSGRVSLMWDRDSQDVPPNSRVSIPQC 144
# Query: 187 GHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPVGDLFIH 246
+++P+D+V RF+ D
DRKL D GQI
A + G +T+ VGD+++
# Sbjct: 145 TKSVSTAVYESCAIDLPIDDVWRFVRDTDVVDRKLSDYGQIFTAVHSGSTTDEVGDVYLD 204
# Query: 247 YTITLFEPQPLASLVET---EQSGAGAAPFGTNLVTVSSNATTT----IITFRGPGVYLL 299
YTI L + QP AS+V+T
# Sbjct: 205 YTIELKDRQPTASMVQTAYWDVSGVLAKSEGPRYFSPSSDVTFTSTMAAISLQLSGIFNV 264
# Query: 300 ALSQRAASFTTLVTAGG-AVVNSHTTLFSGPAYQSIANITAT-IPGGSITYNGTLFG--- 354
+ F+ P Y +
T +P G+ + + T F
# Sbjct: 265 QVVVTCTTAGTLVVGPNISVIGAMYSQFTTPRYFAQPVLACTGVPNGTPSVSMTGFAGIT 324
# Query: 355 NYTLQVTR 362
# Sbjct: 325 RITLVITR 332
# >gi||ref|NP_| capsid protein [Red clover necrotic mosaic virus]
Length = 339
141 bits (355), Expect = 2e-32
Identities = 95/288 (32%), Positives = 138/288 (47%), Gaps = 16/288 (5%)
# Query: 61
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY 120
+A P A T+II+
# Sbjct: 20
PNTSVKTVAIPFAKTQIIKTVNPPPKPARG---ILHTQLVMSVVGSVQMRTNNGKSNQRF 76
# Query: 121 RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR 180
R+NPSNP +FP L
+GRVA+ +D D QD
# Sbjct: 77
RLNPSNPALFPTLAYEAANYDMYRLKKLTLRYVPLVTVQNSGRVAMIWDPDSQDSAPQSR 136
# Query: 181 VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV 240
+A + + +L +P DN
RF+ DNTT DRKLVD GQ+
# Sbjct: 137 QEISAYSRSVSTAVYEKCSLTIPADNQWRFVADNTTVDRKLVDFGQLLFVTHSGSDGIET 196
# Query: 241 GDLFIHYTITLFEPQPLASLVETE--QSGAGAAPFGTNLVTVSSNATTTIITF----RGP 294
# Sbjct: 197 GDIFLDCEVEFKGPQPTASIVQKTVIDLGGTLTSFEGPSYLMPPDAFITSSSFGLFVDVA 256
# Query: 295 GVYLLALSQRAASFTTLVTAGGAVVNSHTTLF-SGPAYQSIANITATI 341
# Sbjct: 257 GTYLLTL------VVTCSTTGSVTVGGNSTLVGDGRAAYGSSNYIASI 298
# >gi||ref|NP_| coat protein (p48) [Oat chlorotic stunt virus]
Length = 454
139 bits (351), Expect = 5e-32
Identities = 91/278 (32%), Positives = 135/278 (48%), Gaps = 24/278 (8%)
# Query: 64
LPGAIAAPVANTRII-RASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRI 122
AAPV+ +R I R SKP
+V I+H E+LG
# Sbjct: 109 LGGTTAAPVSISRNINRRSKPSIKMMGDAVVISHSEMLGAINSGTPSSNVTAFRCTGYRA 168
# Query: 123 NPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVE 182
A ++++YKF R+
+GR+ + FD D
# Sbjct: 169 NPGMSTIFPWLSATAVNYEKYKFRRLSFTLVPLVSTNYSGRIGVGFDYDSSDLVPGNRQE 228
# Query: 183 LANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGL---ATYGGGSTN- 238
E+ PW EST+ +
D KL+DLGQ+ +
# Sbjct: 229 FYALSNHCENMPWQESTVEIKCDNAYRFTGTHVAADNKLIDLGQVVVMSDSVSNGGTISA 288
# Query: 239 --PVGDLFIHYTITLFEPQPL---ASLVETEQSGAGAAPFGTNLVTV---------SSNA 284
P+ DL ++YT+ L EPQ
# Sbjct: 289 ALPLFDLIVNYTVELIEPQQALFSSQLYSGSTTFTSGIPLGTGADTTTVVGPTVVNSTTV 348
# Query: 285 TTTIITFRGP-GV----YLLALSQRAASFTTLVTAGGA 317
++TF+ P GV
# Sbjct: 349 TNCVVTFKLPAGVFEVSYFIAWSTGTAAVVPTVPTTGA 386
# >gi||ref|NP_| capsid protein [Sweet clover necrotic mosaic virus]
Length = 338
132 bits (333), Expect = 7e-30
Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 12/313 (3%)
# Query: 60
HPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNL 119
# Sbjct: 19
NPSTSVKTVTIPFAKTQIVKTVNPPPKPTKAAL---HTQLVLSVVGSIALRANNGKASQR 75
# Query: 120 YRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPAD 179
+R+NPSNP +FP +
+GRVA+ +D D QD
# Sbjct: 76
FRLNPSNPALFPTIAYEAANYDMYRMKKLTLRYVPLVTVQNSGRVAMIWDPDSQDSVPQS 135
# Query: 180 RVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNP 239
+A + + +L +P DN
DRKLVD GQ+
# Sbjct: 136 RQEISAYSRSISTAVYEKCSLTIPADNQWRFVADSNVVDRKLVDYGQLLFVNHSGSEGIE 195
# Query: 240 VGDLFIHYTITLFEPQPLASLVE---TEQSG--AGAAPFGTNLVTVSSNATTTIITFRGP 294
# Sbjct: 196 TGDVFLECEVEFKGPQPTATVVQRGIIDRGGVLTGEGPSYLLPTDIVITATGISMNLDVA 255
# Query: 295 GVYLLALSQRAASFTTLVTAGGA-VVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLF 353
# Sbjct: 256 GTYLVTLVVTSSGSGNLQVLGNSTLVGDFRTAYSGINF--IATFVLTSTGVPSPTSSILF 313
# Query: 354 GNYTLQVTRAKIS 366
# Sbjct: 314 -NESTGVTRAQFS 325
# >gi|9634678|ref|NP_| capsid protein (p38) [Japanese iris necrotic ring virus]
Length = 352
123 bits (309), Expect = 4e-27
Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 12/310 (3%)
# Query: 58
ILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSG 117
# Sbjct: 51
IAQTGLRVNRVSQPISVSSRITTGEPRVTNVKRSMTVTFSEMIGVVRSHSSLSTESWV-- 108
# Query: 118 NLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEP 177
# Sbjct: 109 ----LNPSDIATFPQLSVSAAMYEKYRFTNLAFRFAPSCPTTTGGVVVLVHDPDSSDDLP 164
# Query: 178 ADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGST 237
RF+ DN T+D KL++ G++ +A YG G++
# Sbjct: 165 SDPTMLYEYSGAMRTSAYSPARLIVPTDGAARFVGDNHTSDPKLINFGKLIVANYGQGAS 224
# Query: 238 NP--VGDLFIHYTITLFEPQPLASLVETEQSGAGAAP-FGTNLVTVSSNATTTIITFRGP 294
+G++FI YT+ L + QP A
# Sbjct: 225 DPDMLGEIFIEYTVVLIDRQPSALSTQTLSAESSTGPKLLSRLVEGTKSPYTLTYSFNCG 284
# Query: 295 GVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFG 354
# Sbjct: 285 GTFVVSLFYPIGPVSGPVSGSATIIRAYGDAQSQQA--QVITVRSPCRGGDFTLGLNSPG 342
# Query: 355 NY-TLQVTRA 363
# Sbjct: 343 DIPTAFVTRA 352
# >gi||ref|NP_| capsid [Cowpea mottle virus]
Length = 367
111 bits (278), Expect = 2e-23
Identities = 89/316 (28%), Positives = 147/316 (46%), Gaps = 28/316 (8%)
# Query: 71
PVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVF 130
# Sbjct: 54
PAATSTTITNGVPNYAVRQNKPVIQHVELWGTLMSNT----TESPAYITRTLNPSDPATF 109
# Query: 131 PWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWT 190
R ++ Y P CA T TG V + +D D
# Sbjct: 110 NWVQPLSTGYDMYRLVRCEIIYTPRCAVTTTGSVVLAYDPDASDVNPDNVTDLLNMAGAE 169
# Query: 191 ESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG-GGSTNP--VGDLFIHY 247
+ R++ DN+T+D KLVD G+I +A+YG
# Sbjct: 170 SGSAYSPLSLVPNIKQIDRYIRDNSTSDPKLVDAGKILVASYGQQTSTAPFALGEIRFAY 229
# Query: 248 TITLFEPQPLASLVETEQSGAGAAPFG-------TNLVTVSSNATTTIITFRGPGVYLLA 300
# Sbjct: 230 TLQLIVPQPHSTGV---QRLGSAPPVGRACIRTLTSVVNTTSRLADYTLTLKTAGSYMIS 286
# Query: 301 LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIA-NI---TATIPGGSITYNGTLFGNY 356
+ SG +Y S A N+
# Sbjct: 287 -AVDASSHTK------HKANQLWKVSSGRSYWSRATNVDIRSALKSGATITFEAATDSNA 339
# Query: 357 TLQVTRAKISNNATLI 372
# Sbjct: 340 EVYVVRDSGINDTIVV 355
# >gi|9629190|ref|NP_| capsid protein [Saguaro cactus virus]
Length = 344
109 bits (272), Expect = 8e-23
Identities = 90/314 (28%), Positives = 142/314 (45%), Gaps = 27/314 (8%)
# Query: 46
RRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNN 105
# Sbjct: 42
RSVLGLQNQPDVIVP--------VRPRATARVARPTRQGPGLAGKSMTITKCEYLSDIVS 93
# Query: 106 SSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVA 165
# Sbjct: 94
HVGTIP----LTDHWVVNPGTIKTFPQTSLMASQFNKYRLTALRVRYTSTCSFETSGRVA 149
# Query: 166 IYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLG 225
L +P DNV RF+ D+
# Sbjct: 150 IAFTNDSNDPLPTTKSQLYNFPVHIEAAATESKVLTIPCDNVYRFVRDDGVSDPKLVDFG 209
# Query: 226 QIGLATYGGGSTNP--VGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSN 283
+G+LFI YTI
# Sbjct: 210 RIVVCTYGSSAADPATLGELFIEYTIVFSDPTYTSSLT---QQGENQRSIGPRYATVDYE 266
# Query: 284 ATTTIITFRGPGVYLLA-LSQRAASFTTLVTAG--GAVVNSH------TTLFSGPAYQSI 334
# Sbjct: 267 STRWECQLQAAGRWLVCWVSDSAIPSPSIVGVGAKGKVLTSSDSKCGIATVIAQAPYCSI 326
# Query: 335 ANITATIPGGSITY 348
# Sbjct: 327 VSTTVSAP-SSLTW 339
# >gi|9633807|ref|NP_| coat protein [Carnation mottle virus]
Length = 348
108 bits (269), Expect = 2e-22
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 11/234 (4%)
# Query: 44
WVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKG----SVTIAHREL 99
# Sbjct: 33
WASLSTNQKRRAEMLA--GYTPAILAFTPRRPRMTNSPPRTSRNSPGQAGKSMTMSKTEL 90
# Query: 100 LGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATT 159
+ ++Y P C+
# Sbjct: 91
LCTVKGTTGVIP----SFEDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFE 146
# Query: 160 ETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDR 219
GRVA+ F+ D
RF+ D+ + D
# Sbjct: 147 TNGRVALGFNDDASDTPPTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDA 206
# Query: 220 KLVDLGQIGLATYGGGSTNP-VGDLFIHYTITLFEPQPLASLVETEQSGAGAAP 272
KLVD G++ L+TYG
VG+LFI YTI L +P
# Sbjct: 207 KLVDFGRLVLSTYGFDKADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGP 260
# >gi||ref|NP_| coat protein [Pelargonium flower break virus]
Length = 345
107 bits (267), Expect = 3e-22
Identities = 85/320 (26%), Positives = 143/320 (44%), Gaps = 23/320 (7%)
# Query: 39
WNGVNWVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKG-----SVT 93
# Sbjct: 29
WSSLTTQQKKAARSALS-VIQSPAVV-------VPRRTRVRNPVPAGLKSGNGKAGKSST 80
# Query: 94
IAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYV 153
# Sbjct: 81
LTRSEFICNVSSTTGVTP----TFQSWIINPREVKSFPQSSVCSVGYNKYRITDFRIRFS 136
# Query: 154 PMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMND 213
# Sbjct: 137 TSCSDTMNGKVAIGFTPDSSDPVPVDKSQLYGMQVYADTPAKESVTLKTAADNTIRFLRD 196
# Query: 214 NTTTDRKLVDLGQIGLATYGGGSTNP--VGDLFIHYTITLFEPQPLASLVETEQSGAGAA 271
+++ D KLVD G++ LATYG
# Sbjct: 197 SSSDDAKLVDYGRVVLATYGFDSTAPSVIGELFFEYTVVYLDPTYVVALT---QHGTLTT 253
# Query: 272 PFGTNLVTVSSNATTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAY 331
T+++ AT+T +
# Sbjct: 254 SSGPPYATLTTTATSTSMELNTHGKWLVVWVSADEVINSPVISGSGASGS-VTVVSDAQT 312
# Query: 332 QSIANITATIPGGSITYNGT 351
+A +TA +PG
# Sbjct: 313 TVVAVVTANLPGAIISNTST 332
# >gi||ref|NP_| coat protein [Turnip crinkle virus]
Length = 351
Score = 93.2 bits (230), Expect = 6e-18
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNP 127
+++P+ + ++
# Sbjct: 58
LSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYTTAV----LNPSEP 113
# Query: 128 VVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMG 187
G+VA+ FD+D
# Sbjct: 114 GTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPPNDLASLYNIE 173
# Query: 188 HWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTN--PVGDLFI 245
+D KLVD G++ +ATYG G+ +
# Sbjct: 174 GCVSSVPWTGFILTVPTDSTDRFVADG-ISDPKLVDFGKLIMATYGQGANDAAQLGEVRV 232
# Query: 246 HYTITL 251
# Sbjct: 233 EYTVQL 238
# >gi|9627424|ref|NP_| coat protein [Cardamine chlorotic fleck virus]
Length = 351
Score = 92.4 bits (228), Expect = 1e-17
Identities = 79/263 (30%), Positives = 120/263 (45%), Gaps = 24/263 (9%)
# Query: 76
RIIRASKPKFTRSKGSVTIAHRELLGQFN-NSSGLVVNGGVSGNLYR------------- 121
# Sbjct: 48
RVTKQPTPKVVRVSAPAAVSYREVTGAPRVTTAGKVLTHTASELITTLKKNTSLEPKYVE 107
# Query: 122 --INPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPAD 179
IAAS+++YKF
G+VA+ F++D
# Sbjct: 108 AIVNPSRVGTFNQLPDIAASYEKYKFTSLRFRYSSTCPTSTGGKVALAFERDAANPLPDN 167
# Query: 180 RVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATY--GGGST 237
L VP DNV RF+ D
+D KLVD G++
# Sbjct: 168 LTAFYNLEGNTSSNPRDSFVLTVPCDNVARFVADG-GSDPKLVDFGKLLAASYGQGEGDA 226
# Query: 238 NPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATT--TIITFRGPG 295
N +G++ I YT+ L+
# Sbjct: 227 NGLGEIHIEYTVQLY--NRLGSAQRSQIGSLDGKFLGPRLVEVTSGKSDKGTKFTFSFHG 284
# Query: 296 VYLLALSQRAASFTTLVTAGGAV 318
# Sbjct: 285 CGLIPILWLAKPRWPL-TAGSAV 306
# >gi||ref|NP_| coat protein [Southern bean mosaic virus]
Length = 266
Score = 67.8 bits (164), Expect = 3e-10
Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 55/253 (21%)
# Query: 46
RRKLGRSKKSDVILHP-GVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFN 104
# Sbjct: 26
RRPRNRRRRRSAARQPQSTQAGVSMAPIAQGTMVRLREPSLRTAGGVTVLTHSELSTELS 85
# Query: 105 NSSGLVVNGGVSGNLYRINPSNPVVFP-----WLQGIAASFDQYKFDRVQLQYVPMCATT 159
WL+G+AA++ +Y
# Sbjct: 86
VTNAIVI-------------TSELVMPYTMGTWLRGVAANWSKYSLLSVRYTYLPSCPST 132
# Query: 160 ETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDR 219
# Sbjct: 133 TSGSIHMGFQYDMADTLPVSVNQLSNLRGYVSGQVWSGSSGLCYINGTRCLDTANAITTT 192
# Query: 220 KLVDLGQIG--------------------------------LATYGGGSTNPV--GDLFI 245
# Sbjct: 193 --LDVGQLGKKWYPFKTSTDFTTAVGVNVNIATPLVPARLIIAMLDGSSSTAVSTGRLYV 250
# Query: 246 HYTITLFEPQPLA 258
# Sbjct: 251 SYTIQLIEPTALA 263
# >gi||ref|NP_| coat protein [Sesbania mosaic virus]
Length = 268
Score = 63.9 bits (154), Expect = 4e-09
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
# Query: 46
RRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTI-AHRELLGQFN 104
# Sbjct: 28
RRRNRRRQRSAVQQLQPTQAGISMAPSAQGAMVRIRNPAVSSSRGGITVLTHSELSAEIG 87
# Query: 105 NSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRV 164
WL+G+AA++ +Y +
# Sbjct: 88
VTDSIVVSSEL------VMPYT--VGTWLRGVAANWSKYSWLSVRYTYIPSCPSSTAGSI 139
# Query: 165 AIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDL 224
# Sbjct: 140 HMGFQYDMADTVPVSVNQLSNLRGYVSGQVWSGSAGLCFINGTR--CSDTSTAISTTLDV 197
# Query: 225 GQIGLATY 232
# Sbjct: 198 SKLGKKWY 205
# >gi|9629187|ref|NP_| coat protein [Tobacco necrosis virus A]
Length = 276
Score = 59.3 bits (142), Expect = 9e-08
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 41/219 (18%)
# Query: 66
GAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPS 125
# Sbjct: 62
GYIVAPTSGGVVTRPIVPKFSNRGDSTIVRNTEIL-----------NNQILAALGAFNTT 110
# Query: 126 NPVVFP----WLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRV 181
++ Y+P C TT +G +A+ F
# Sbjct: 111 NSALIAAAPSWLASIADLYSKYRWLSCEIIYIPKCPTTTSGSIAMAFTYDRNDAAPTARA 170
# Query: 182 ELANM--------------GHWTESAPWCESTLNVPVDNVK-----------RFMNDNTT 216
# Sbjct: 171 QLSQSYKAINFPPYAGYDGAAYLNSNQGAGSAIAVQLDVTKLDKPWYPTISSAGFGALSV 230
# Query: 217 TDRKLVDLGQIGLATYGGGST-NPVGDLFIHYTITLFEP 254
+ +A+ GG +T
P GDLFI Y I
# Sbjct: 231 LDQNQFCPASLVVASDGGPATATPAGDLFIKYVIEFIEP 269
# >gi|9628595|ref|NP_| viral coat protein [Lucerne transient streak virus]
Length = 278
Score = 58.9 bits (141), Expect = 1e-07
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNP 127
P A + ++R S P
# Sbjct: 35
VTIPAATSVVVRKSSPVIRSDRKGIQVCNTEFIRSFDLNASFTV-----GSL----PCTP 85
# Query: 128 VVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMG 187
+AAS+ ++K++ ++
# Sbjct: 86
GTMPWLSRMAASWGRWKWNSLRFTYIPAAPSNTQGTVAMGFLYDSLDSLPSNLASMSSLD 145
# Query: 188 HWTESAPW--CEST 199
# Sbjct: 146 GFTTGAVWSGCEGS 159
# >gi|9627903|ref|NP_| coat protein [Southern cowpea mosaic virus]
Length = 279
Score = 55.8 bits (133), Expect = 1e-06
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 40/240 (16%)
# Query: 47
RKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNS 106
# Sbjct: 41
RRKRRAKRRAAQVPKPTQAGVSMAPIAQGTMVKLRPPMLRSSMDVTILSHCELSTELAVT 100
# Query: 107 SGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAI 166
WL+G+A ++ +Y +
Y+P C TT +G + +
# Sbjct: 101 DTIVVTSEL------VMPFT--VGTWLRGVAQNWSKYAWVAIRYTYLPSCPTTTSGAIHM 152
# Query: 167 YFDKDQQDVEPADRVELANMGHWTESAPW-------------CEST---LNVPVD----N 206
# Sbjct: 153 GFQYDMADTLPVSVNQLSNLKGYVTGPVWEGQSGLCFVNNTKCPDTSRAITIALDTNEVS 212
# Query: 207 VKRF----MNDNTTTDRKLVDLGQI------GLATYGGGSTNPV--GDLFIHYTITLFEP 254
# Sbjct: 213 EKRYPFKTATDYATAVGVNANIGNILVPARLVIAMEGGSSKTAVNTGRLYASYTIRLIEP 272
# >gi||ref|NP_| coat protein [Subterranean clover mottle virus]
Length = 253
Score = 53.9 bits (128), Expect = 4e-06
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
# Query: 71
PVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVF 130
# Sbjct: 44
PMASTVVIGRSFPAIHSEGTRTRVCHTELIRAVDINTIFTLN---------FTWCIPSAF 94
# Query: 131 PWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWT 190
PWL G+A ++ ++++
# Sbjct: 95
PWLSGVAVNWSKWRWVSLRFTYMPAAATTTQGTVALGYLYDALDAVPAALQQMSSLAGFS 154
# Query: 191 ESAPWCES 198
# Sbjct: 155 TGAVWSGS 162
# >gi||ref|NP_| coat protein [Beet black scorch virus]
Length = 232
Score = 53.5 bits (127), Expect = 5e-06
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
# Query: 124 PSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVEL 183
WL GIA+++ ++++
# Sbjct: 73
PSN---LGWLNGIASNYSKFRWLAIKLIYIPIVPTTTAGAMTMALTYDPADATPTSFQQV 129
# Query: 184 ANMGHWTESAPWC-------------ESTLNVPVD-NVKRF------------MNDNTTT 217
V +D +V RF
# Sbjct: 130 QQMYNSITAPVWAGFDGATVQLLGERPTTGAVCIDVDVNRFGFTWYRYATLAAITALTAN 189
# Query: 218 DRKLVDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLA 258
VG+L I Y+I L EP P A
# Sbjct: 190 DRNLYIPSVGNVATSGGTAATNVGNLMIKYSIELIEPIPAA 230
# >gi|9628879|ref|NP_| capsid protein [Olive latent virus 1]
Length = 270
Score = 52.4 bits (124), Expect = 1e-05
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
# Query: 63
VLPGAIAAPVANTRI-IRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYR 121
# Sbjct: 54
VLP--VIAPVAGGVISTEGHVPRITTTNEQTVVRNTEIISAINSAA----LGAIFGNYVT 107
# Query: 122 INPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRV 181
+ +Y++ +++
# Sbjct: 108 VIPSN---LSWLAGLSDLYSKYRWRKLRFIYLPVCPTSTQGNVSMSLSFDRIDTQPTSIT 164
# Query: 182 EL 183
# Sbjct: 165 QM 166
# >gi||ref|NP_| coat protein [Sclerophthora macrospora virus A]
Length = 422
Score = 50.4 bits (119), Expect = 4e-05
Identities = 65/245 (26%), Positives = 96/245 (39%), Gaps = 43/245 (17%)
# Query: 74
NTRIIRASK--PKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFP 131
+ + HRE + +
# Sbjct: 77
NSLVSRASTSIPMMHKADQKIMVRHREFVMEVRSAINFSVQ-----RTFPLNPGMSQSFP 131
# Query: 132 WLQGIAASFDQYKFDRVQLQYVPMCAT------TETGRVAIYFDKDQQDVEPADRVELAN 185
# Sbjct: 132 WLAKLASSFQQYSIKGMVFHYVPTSGSAISGTNNALGSIMLQTSYRANDSTPQSKVECLN 191
# Query: 186 MGHWTESAPWCESTLNVPVD-NVKR--FMNDNTTT-------DRKLVDLGQIGLATYG-- 233
# Sbjct: 192 EYWACESVP--SETFAHPIECNPKENPFQVQYIRTGAVPAGDNVLLYDLGLTSIAVSGCQ 249
# Query: 234 -GGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVS-SNATTTIITF 291
+GDL++ Y + L +P
# Sbjct: 250 VDGVT--LGDLWVTYEVELSKP-IMDSTAVTQQ-----------LVTASWINANVVTATY 295
# Query: 292 RGPGV 296
# Sbjct: 296 LGTGV 300
# >gi||ref|NP_| coat protein [Turnip rosette virus]
Length = 255
Score = 46.2 bits (108), Expect = 8e-04
Identities = 37/175 (21%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
# Query: 30
LSPAGRELIWNGVNWVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFT--R 87
+S +++ ++ P
# Sbjct: 1
MEKGNKKLTKNQRRKTRKKSSQSGRTNSVVTP------LWAPVSTGTVMQGGALSISSLN 54
# Query: 88
SKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPW-LQGIAASFDQYKFD 146
L+G+A S+ ++K+
# Sbjct: 55
NKGDIRVCGREVVTEIS------VSNTPTPSVLQVIPET---FPSRLKGLATSWSKFKWQ 105
# Query: 147 RVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLN 201
Y+ +C TTE G V
# Sbjct: 106 AIKFVYMSICPTTERGSVHFGFLYDTVDNLPGTVGEISTLQGYTTGSVWAGTSGN 160
# >gi||ref|NP_| 29 kDa coat protein [Tobacco necrosis virus D]
Length = 268
Score = 43.5 bits (101), Expect = 0.005
Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 34/214 (15%)
# Query: 68
IAAPVANTRII-RASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSN 126
# Sbjct: 55
LTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANIT----LAAAGAFS---FTTQPLI 107
# Query: 127 PVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELAN- 185
+ Y+P C T+
# Sbjct: 108 PSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQVSQC 167
# Query: 186 -----------------MGHWTESAPWCESTLNVPVDNVKRF--MNDNTTTDRKLVDLGQ 226
# Sbjct: 168 YQSITFPPYAGYGGASALNHKGSSGESLVSTLDTNRVDKKWYSTIGNAAFTALTSIDKNQ 227
# Query: 227 IGLATY------GGGSTNPVGDLFIHYTITLFEP 254
VGD+F+ Y I
# Sbjct: 228 FCPATAIIAGDGGPVAATAVGDIFMRYEIEFIEP 261
# >gi|9629523|ref|NP_| capsid protein [Leek white stripe virus]
Length = 251
Score = 38.1 bits (87), Expect = 0.22
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 45/239 (18%)
# Query: 51
RSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTI-AHRELLGQFNNSS-- 107
++ SV + +H EL
# Sbjct: 26
QSRKGQMVLQ------TIVEPSARGSIYRNVIPPGIFNRDSVNLLSHTELFVGVDSGALG 79
# Query: 108 GLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIY 167
# Sbjct: 80
AFVLNGGA------IIPSQMTN---CNRHAVNFSKYSWKYLEFIYIPFVATTFPGQVVLA 130
# Query: 168 FDKDQQDVEPADRVELANMGHWTESAPW-------------CESTLNVPV--DNVKRFMN 212
# Sbjct: 131 PNFDRSDANPTSIASLEQYDYAVSTPIWGGSEGSRRMHSNAACSAVNVIIETDNFDKVVY 190
# Query: 213 DNTT---------TDRKLVDLGQIGLATYGGGSTN---PVGDLFIHYTITLFEPQPLAS 259
+ +AT GG +
# Sbjct: 191 PYKTLANFTGLPAVDQNIFAPATMFVATQGGNNVAIQLSVGKLYCKYVIEFFNPIDPAS 249
# >gi||ref|NP_| 26 kDa capsid protein [Panicum mosaic virus]
Length = 242
Score = 33.9 bits (76), Expect = 4.2
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
# Query: 69
AAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGL--VVNGGVSGNLYRINPSN 126
++H E++ Q N+S+
# Sbjct: 34
STPLQYVTTLGPSRPRMGQGQGWQKLSHEEIILQVNSSTAADTIQTIPIIPRLSVPAGDK 93
# Query: 127 PVVF---PWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVEL 183
P L+ I ++F
# Sbjct: 94
PIYSGSAPHLRTIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDL 153
# >gi||ref|NP_| CP readthrough product [Soybean dwarf virus]
Length = 722
Score = 33.5 bits (75), Expect = 5.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
# Query: 111 VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFD 169
# Sbjct: 72
INGSSKGSI-TFGPSLSECKPFSDGILKAYHEYKITSILLQFITEASSTSSGSIAYELD 129
# >gi||ref|NP_| coat protein [Soybean dwarf virus]
Length = 200
Score = 33.5 bits (75), Expect = 5.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
# Query: 111 VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFD 169
# Sbjct: 72
INGSSKGSI-TFGPSLSECKPFSDGILKAYHEYKITSILLQFITEASSTSSGSIAYELD 129
Database: SSRNAp
Posted date:
Number of letters in database: 1,206,368
Number of sequences in database:
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 863,843
Number of Sequences: 2912
Number of extensions: 37475
Number of successful extensions: 204
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 43
length of query: 372
length of database: 270,000,000
effective HSP length: 124
effective length of query: 248
effective length of database: 270,000,000
effective search space:
effective search space used:
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
S2: 73 (32.7 bits)}
gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos
latent virus]
53proteins
Coat protein
372 letters
BLASTP 2.2.9 [May-01-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",
Nucleic Acids Res. 25:.
Query= gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos
latent virus]
(372 letters)
Database: SSRNAp
,368 total letters
Sequences producing significant alignments:
(bits) Value
gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos la...
gi||ref|NP_| coat protein, p40 [Pelargonium necr...
gi||ref|NP_| coat protein [Cymbidium ringspot vi...
gi|9629513|ref|NP_| capsid protein [Galinsoga mosaic virus]
gi|9790331|ref|NP_| p41 capsid protein [Tomato bushy stu...
gi||ref|NP_| coat protein CP [Pear latent virus]
gi|9625554|ref|NP_| coat protein of 41 kDa [Artichoke mo...
gi||ref|NP_| capsid protein [Carnation Italian r...
gi|9626674|ref|NP_| coat protein [Cucumber necrosis virus]
gi||ref|NP_| coat protein [Cucumber Bulgarian vi...
gi||ref|NP_| coat protein [Johnsongrass chloroti...
gi|9626977|ref|NP_| capsid protein [Melon necrotic spot ...
gi||ref|NP_| coat protein [Hibiscus chlorotic ri...
gi||ref|NP_| coat protein [Pea stem necrosis virus]
gi||ref|NP_| p37K protein [Carnation ringspot vi...
gi||ref|NP_| capsid protein [Red clover necrotic...
gi||ref|NP_| coat protein (p48) [Oat chlorotic s...
gi||ref|NP_| capsid protein [Sweet clover necrot...
gi|9634678|ref|NP_| capsid protein (p38) [Japanese iris ...
gi||ref|NP_| capsid [Cowpea mottle virus]
gi|9629190|ref|NP_| capsid protein [Saguaro cactus virus]
gi|9633807|ref|NP_| coat protein [Carnation mottle virus]
gi||ref|NP_| coat protein [Pelargonium flower br...
gi||ref|NP_| coat protein [Turnip crinkle virus]
gi|9627424|ref|NP_| coat protein [Cardamine chlorotic fl...
gi||ref|NP_| coat protein [Southern bean mosaic ...
gi||ref|NP_| coat protein [Sesbania mosaic virus]
gi|9629187|ref|NP_| coat protein [Tobacco necrosis virus A]
gi|9628595|ref|NP_| viral coat protein [Lucerne transien...
gi|9627903|ref|NP_| coat protein [Southern cowpea mosaic...
gi||ref|NP_| coat protein [Subterranean clover m...
gi||ref|NP_| coat protein [Beet black scorch virus]
gi|9628879|ref|NP_| capsid protein [Olive latent virus 1]
gi||ref|NP_| coat protein [Sclerophthora macrosp...
gi||ref|NP_| coat protein [Turnip rosette virus]
gi||ref|NP_| 29 kDa coat protein [Tobacco necros...
gi|9629523|ref|NP_| capsid protein [Leek white stripe vi...
gi||ref|NP_| 26 kDa capsid protein [Panicum mosa...
gi||ref|NP_| CP readthrough product [Soybean dwa...
gi||ref|NP_| coat protein [Soybean dwarf virus]
# >gi|9633616|ref|NP_| hypothetical protein, 41K [Pothos latent virus]
Length = 372
740 bits (1910), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILH 60
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILH
# Sbjct: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILH 60
# Query: 61
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY 120
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY
# Sbjct: 61
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY 120
# Query: 121 RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR 180
RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR
# Sbjct: 121 RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR 180
# Query: 181 VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV 240
VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV
# Sbjct: 181 VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV 240
# Query: 241 GDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLA 300
GDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLA
# Sbjct: 241 GDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLA 300
# Query: 301 LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFGNYTLQV 360
LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFGNYTLQV
# Sbjct: 301 LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFGNYTLQV 360
# Query: 361 TRAKISNNATLI 372
TRAKISNNATLI
# Sbjct: 361 TRAKISNNATLI 372
# >gi||ref|NP_| coat protein, p40 [Pelargonium necrotic spot virus]
Length = 378
462 bits (1188), Expect = e-129
Identities = 226/379 (59%), Positives = 279/379 (73%), Gaps = 8/379 (2%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLG-------RSK 53
G +M SP G +L W G++WV
# Sbjct: 1
MALVRRNNNSNMVAVPAARATGAAIGSMMFSPTGAKLFWTGMDWVLDKTWQKIKNQFKSR 60
# Query: 54
KSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNG 113
PGAIAAPVA TR+IR SKPKFTRSKG+VTI HREL+GQ+NNS+GLVVNG
# Sbjct: 61
KTDMILHPGAYPGAIAAPVAVTRVIRGSKPKFTRSKGAVTITHRELVGQYNNSAGLVVNG 120
# Query: 114 GVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQ 173
V G +Y++NPSN ++FPWLQ IA++FDQYKFD V+L Y+PMCATTETGRVA+YFDKD Q
# Sbjct: 121 SVGGTIYKLNPSNALLFPWLQSIASNFDQYKFDNVKLTYIPMCATTETGRVALYFDKDSQ 180
# Query: 174 DVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG 233
PADR+ELANM H
E+APW ES LNVP DNVKRF NDNTTTD KLVDLGQIG+AT+G
# Sbjct: 181 DPVPADRMELANMFHLRETAPWAESNLNVPTDNVKRFTNDNTTTDLKLVDLGQIGIATFG 240
# Query: 234 GGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRG 293
TNPVGDLFIHYT+T FEPQP A +VETEQ+GAGA
+A +T+I F+
# Sbjct: 241 GSGTNPVGDLFIHYTVTFFEPQPSAGIVETEQTGAGALDSGPDMVSVGGDAISTLIVFKT 300
# Query: 294 PGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLF 353
QSI N+T + PGG + YNGT F
# Sbjct: 301 PGTFILTLDSVIPPWGLLVPT-GVTVNSSTHAQATGFCQSIVNLTVSTPGGILQYNGTGF 359
# Query: 354 GNYTLQVTRAKISNNATLI 372
GN T+ + RAK++N
# Sbjct: 360 GNRTVNIVRAKVTNRVDII 378
# >gi||ref|NP_| coat protein [Cymbidium ringspot virus]
Length = 380
441 bits (1133), Expect = e-122
Identities = 222/383 (57%), Positives = 283/383 (73%), Gaps = 14/383 (3%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWV----------RRKLG 50
# Sbjct: 1
MAMTTTNNNRAM--TRAAKQALPALGALATSGMGQQLFMSGVNYAIEKGKQFVPNRRGGK 58
# Query: 51
RSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLV 110
+++ +D++ HPG L G++AAPVA +RI+R SKP+F RSKGSVTI HREL+GQFN+SS LV
# Sbjct: 59
KNRNTDMVAHPGALSGSMAAPVAISRIVRGSKPRFIRSKGSVTITHRELVGQFNSSSALV 118
# Query: 111 VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDK 170
VNGG++GNLY+INP+N V+FPWLQ +A++FDQY F+ ++LQYVPMCA+TETGRVAIYFDK
# Sbjct: 119 VNGGITGNLYKINPANAVLFPWLQTLASNFDQYMFNTLRLQYVPMCASTETGRVAIYFDK 178
# Query: 171 DQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLA 230
D QD+EP DR+ELANM H TE+APWCE +L VPVD+VKRFMNDN+T D KL+DLGQ+GLA
# Sbjct: 179 DSQDLEPVDRIELANMRHLTETAPWCEGSLRVPVDSVKRFMNDNSTVDPKLIDLGQVGLA 238
# Query: 231 TYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIIT 290
TN VGDLFIHYT+T +EPQP + L
LV V++ ATTT +T
# Sbjct: 239 TYGGPGTNAVGDLFIHYTVTFYEPQPSSGLTSTLQTGTGSANAGPTLVAVATTATTTTVT 298
# Query: 291 FRGPGVYLLALSQRAASFTTLVTAGGAVVNSHT-TLFSGPAYQSIANITATIPGGSITYN 349
FR PG YL+++ QRA +FT
# Sbjct: 299 FRSPGTYLVSMVQRATTFTG-VTPIALTFNSNTNTTAAGTNYSANYNVTVPVPGAQMRFV 357
# Query: 350 GTLFGNYTLQVTRAKISNNATLI 372
GT FGNYTLQVTRAKI+N ATL+
# Sbjct: 358 GTGFGNYTLQVTRAKITNAATLL 380
# >gi|9629513|ref|NP_| capsid protein [Galinsoga mosaic virus]
Length = 340
327 bits (839), Expect = 1e-88
Identities = 170/352 (48%), Positives = 226/352 (64%), Gaps = 14/352 (3%)
# Query: 23
VKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASK 82
+APVA +R +R S
# Sbjct: 1
MKTTQPKTKPSGSPLADNNKSYRSNRTNKQKTQDQ-----------SAPVAISRQVRGSV 49
# Query: 83
PKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQ 142
VNGGV GNLYR+NP+N
# Sbjct: 50
PKLAGNR-PFTFGHRELIATISNTVLFQVNGGVGGNLYRLNPANSSLFTWLPSISANFDQ 108
# Query: 143 YKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNV 202
Y+F +V L+Y P C+TTE GRV +YFDKD QD EP DRVELAN GH +E+
# Sbjct: 109 YRFLKVWLEYAPFCSTTEAGRVGLYFDKDSQDPEPTDRVELANFGHLSETVAWSPIELHL 168
# Query: 203 PVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVE 262
P DNV R+M+D++ +D KL+DLGQIG ATYGGGSTN +GDLFIHYTI L +PQP
# Sbjct: 169 PTDNVVRYMSDSSVSDPKLIDLGQIGFATYGGGSTNAIGDLFIHYTIELQQPQPTYFAVQ 228
# Query: 263 TEQSGAGAAPFGTNLVTV-SSNATTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNS 321
T+T +TFR PG YL+ L QR+ +FT++V
# Sbjct: 229 TLQSGNGSSSAGPTVAAVTASTGTSTTLTFRSPGTYLVNLFQRSLTFTSIVATGGTVINS 288
# Query: 322 HTTLFSG-PAYQSIANITATIPGGSITYNGTLFGNYTLQVTRAKISNNATLI 372
N+T + PGG++
# Sbjct: 289 QATLQSGATAYCSQHNVTVSTPGGALVATGTGFGNYNFQVTRARVQNRCDLL 340
# >gi|9790331|ref|NP_| p41 capsid protein [Tomato bushy stunt virus]
Length = 388
310 bits (793), Expect = 3e-83
Identities = 175/388 (45%), Positives = 235/388 (60%), Gaps = 16/388 (4%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAG------QVMLSPAGRELIWNGVNWVRR-----KL 49
# Sbjct: 1
MAMVKRNNNTGMIPVSTKQLLALGAAAGATALQGFVKNNGMAIVEGAVDLTKRAYKAVRR 60
# Query: 50
GRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSSG 108
GAI APVA TR +
SKPKFT R+ GSVT+ HRE L Q NNS+G
# Sbjct: 61
RGGKKQQMINHVGGTGGAIMAPVAVTRQLVGSKPKFTGRTSGSVTVTHREYLSQVNNSTG 120
# Query: 109 LVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYF 168
VNGG+ GNL ++NP N
IA++FDQY F+ V L YVP+C+TTE GRVAIYF
# Sbjct: 121 FQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYTFNSVVLHYVPLCSTTEVGRVAIYF 180
# Query: 169 DKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIG 228
DKD +D EPADRVELAN
E+APW E+ L VP D +KRF +D++T+D KL+DLGQ+G
# Sbjct: 181 DKDSEDPEPADRVELANYSVLKETAPWAEAMLRVPTDKIKRFCDDSSTSDHKLIDLGQLG 240
# Query: 229 LATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNAT 285
TN VGD+FI Y++TL+ PQP
# Sbjct: 241 IATYGGAGTNAVGDIFISYSVTLYFPQPTNTLLSTRRLDLAGALVTASGPGYLLVSRTAT 300
# Query: 286 TTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFS-GPAYQSIANITATIPGG 344
G ++++ + R
VNS T + + G
# Sbjct: 301 VLTMTFRATGTFVISGTYRCLTATTLGLAGGVNVNSITVVDNIGTDSAFFINCTVSNLPS 360
# Query: 345 SITYNGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 361 VVTFTSTGITSATVHCVRATRQNDVSLI 388
# >gi||ref|NP_| coat protein CP [Pear latent virus]
Length = 388
300 bits (769), Expect = 2e-80
Identities = 171/389 (43%), Positives = 232/389 (59%), Gaps = 18/389 (4%)
# Query: 1
MALVKRNNNMAL------IATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLG--RS 52
M +V+RNNN A+
# Sbjct: 1
MEIVRRNNNSAIAINKKQLATMAATAAAGALSNYVKNN-GAMVVQGAVNMGKKAYGAVRN 59
# Query: 53
KK----SDVILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSS 107
++H G + GA+ APVA +R +
R+ GSVT+ HRE L Q NNSS
# Sbjct: 60
RKNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSVTVTHREYLTQVNNSS 119
# Query: 108 GLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIY 167
NGG+ GNL ++NP N
IA++FDQY F+ V L YVP+C T E GRVA+Y
# Sbjct: 120 AFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVVLHYVPLCGTNEVGRVAMY 179
# Query: 168 FDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQI 227
+DKD +D EPADRVELAN G
E+APW E+ L VP D +KR+ +D+T
DRKL+DLGQ+
# Sbjct: 180 WDKDSEDPEPADRVELANFGILKETAPWAEAILRVPTDKMKRYCDDSTVVDRKLIDLGQL 239
# Query: 228 GLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNA 284
TNPVGD+F+ Y++TL+ PQP
# Sbjct: 240 GISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLSLTGALEASTGPGYINVTRTP 299
# Query: 285 TTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTL-FSGPAYQSIANITATIPG 343
# Sbjct: 300 TLLTITFRSTGTFLLSGVFRDTGVAVLGVTGGIGINSQTTLDVVGVATSFLVNCTVSTLP 359
# Query: 344 GSITYNGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 360 ATLTYGSAGITSVTANCTRATRANTVTLL 388
# >gi|9625554|ref|NP_| coat protein of 41 kDa [Artichoke mottled crinkle virus]
Length = 388
296 bits (759), Expect = 3e-79
Identities = 170/388 (43%), Positives = 229/388 (59%), Gaps = 16/388 (4%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAG------QVMLSPAGRELIWNGVNWVRR-----KL 49
# Sbjct: 1
MAMVKRNNNTGLIPVSTKQLMALGAAAGASALQGFVRNNGAAIVGKVVDVGQKVYKAVKK 60
# Query: 50
GRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSSG 108
GAI APVA TR +
SKPKFT ++ GSVT+ HRE L Q N S+G
# Sbjct: 61
RGGKKQQQIKHVGGTGGAIMAPVAVTRQLTGSKPKFTGKTSGSVTVTHREYLSQVNMSTG 120
# Query: 109 LVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYF 168
VNGG+ GNL ++NP N
IA++FDQY F+ V L YVP+CATTE GRVA+YF
# Sbjct: 121 FQVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYSFNSVLLHYVPLCATTEVGRVAMYF 180
# Query: 169 DKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIG 228
DKD +D EPADRVELAN
L VP D +KRF +D++T D KL+DLGQ+G
# Sbjct: 181 DKDSEDPEPADRVELANYSVLAETAPWAERALWVPTDRIKRFCDDSSTLDHKLIDLGQLG 240
# Query: 229 LATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNAT 285
TN VGD+FI Y++TL+ PQP
# Sbjct: 241 VATYGGAGTNAVGDIFISYSVTLYFPQPTNTLLSTRRLDLAGTPVTASGPGYILLTRTPT 300
# Query: 286 TTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFS-GPAYQSIANITATIPGG 344
G ++++ + R
VNS T + + G +
# Sbjct: 301 VLTMTFRATGTFVISGAYRCLTSTVLGLTGGVNVNSITVVDNVGTSSSFFINCTVSNLPS 360
# Query: 345 SITYNGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 361 VITFTTTGITSATIQCNRATRQNDVSLI 388
# >gi||ref|NP_| capsid protein [Carnation Italian ringspot virus]
Length = 386
281 bits (719), Expect = 1e-74
Identities = 152/322 (47%), Positives = 209/322 (64%), Gaps = 7/322 (2%)
# Query: 58
ILHPGVLPGAIAAPVANTRIIRASKPKFT-RSKGSVTIAHRELLGQFNNSSGLVVNGGVS 116
I+H G + GAI APVA TR +R SKPKF+ R+ GSVT++HREL+ Q NNS+
# Sbjct: 65
IVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSHRELITQVNNSTQFVVNGGVT 124
# Query: 117 GNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVE 176
GNL ++NP N
IAA+FDQY F+ V L YVP+CATTETGRVA+YFDKD +D+E
# Sbjct: 125 GNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPLCATTETGRVAMYFDKDSEDLE 184
# Query: 177 PADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGS 236
L +P D +KR+ +D++
DRKL+DLGQIG+ATYGG
# Sbjct: 185 PADRVELANYATLKGNCTMGRGMLRIPTDRIKRYNDDSSVNDRKLIDLGQIGIATYGGSG 244
# Query: 237 TNPVGDLFIHYTITLFEPQPLASLVETEQ---SGAGAAPFGTNLVTVSSNATTTIITFRG 293
TNPVGD+FI Y++TL
PQP A+ V+T +
# Sbjct: 245 TNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLDTNVGPSYTITSSTATVYTVAFRT 304
# Query: 294 PGVYLLALSQRAASFTTL-VTAGGAVVNSHTTL-FSGPAYQSIANITATIPGGSITYNGT 351
# Sbjct: 305 VGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTAGTAFSYMTNVTVSALPASITFTVV 364
# Query: 352 -LFGNYTLQVTRAKISNNATLI 372
# Sbjct: 365 GVITSSTSHAVRASRTNNADMI 386
# >gi|9626674|ref|NP_| coat protein [Cucumber necrosis virus]
Length = 380
252 bits (644), Expect = 6e-66
Identities = 150/384 (39%), Positives = 213/384 (55%), Gaps = 17/384 (4%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVRRKLGRSKKSD---- 56
MALV RNNNM
+E IWNGV W+
# Sbjct: 1
MALVSRNNNMRTLAKLAAPLATAGTRTIV---DNKEAIWNGVKWIWGKLPKGKKGKNGNG 57
# Query: 57
-VILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSG--LVVNG 113
+KGSV I HRE +
# Sbjct: 58
ALIAHPQAFPGAIAAPISYAYAVKGRKPRFQTAKGSVRITHREYVSVLSGTNGEFLRNNG 117
# Query: 114 GVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQ 173
N + INP NP +FPWL
IAA+FDQYKF+ ++ +YVP+
GRVA+YFDKD +
# Sbjct: 118 TGPNNDFSINPLNPFLFPWLVNIAANFDQYKFNSLRFEYVPLVNTTTNGRVALYFDKDSE 177
# Query: 174 DVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG 233
+ L VP DNVKRF++D ++ D KL++LGQ G
# Sbjct: 178 DPGPDDRAALANYAHLSEISPWAITKLTVPTDNVKRFISDTSSGDPKLINLGQFGWVAY- 236
# Query: 234 GGSTNPVGDLFIHYTITLFEPQPLASLVET---EQSGAGAAPFGTNLVTVS-SNATTTII 289
+GD+F+ YT+ LFE QP + L+E+
# Sbjct: 237 SGPTAELGDIFVEYTVDLFEAQPTSPLLESLFRESASSVQTRMGLPYFSLEVASATDLVW 296
# Query: 290 TFRGPGVYLLA-LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITY 348
# Sbjct: 297 QARVPGTYVVTIIFNSTVGGLTPSISGGGTINSSFSVSTAGSSAYVANITIRVNANLSLS 356
# Query: 349 NGTLFGNYTLQVTRAKISNNATLI 372
# Sbjct: 357 GLTGATNAQLFAVRA-ITENAVQV 379
# >gi||ref|NP_| coat protein [Cucumber Bulgarian virus]
Length = 380
252 bits (643), Expect = 8e-66
Identities = 140/359 (38%), Positives = 202/359 (56%), Gaps = 18/359 (5%)
# Query: 10
MALIATEAGKLA-----AVKAGQVMLSPAGRELIWNGVNWVRRKLG-RSKKSDVILHP-- 61
R++I++G+NW+
# Sbjct: 1
MALVLRKAGNIVPYVGPAAKAGATAVYN-NRKIIYDGLNWIYAKVSKRVKKKNGIMSNVV 59
# Query: 62
GVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSG--LVVNGGVSGNL 119
PG+I APVA +R +RAS+PKF R++G V I HRE + Q N
# Sbjct: 60
GASPGSIVAPVATSRQLRASRPKFMRTRGGVNITHREYVTQVNGVNGGTFQLNRTFGPGA 119
# Query: 120 YRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPAD 179
IA++FD+YKF R+
YVPMCATTE GRV ++FD+D +D
# Sbjct: 120 YRVNPTNAAVFPWLLNIASNFDKYKFTRLSFHYVPMCATTEVGRVGLFFDRDSEDSGPFD 179
# Query: 180 RVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNP 239
L VP D++ RF++D+T TD KL+DLG+ G
# Sbjct: 180 RSEVANMAHLAETPPWGEVVLQVPCDSIDRFISDSTVTDTKLIDLGRFGYVVYGGSTNNA 239
# Query: 240 VGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGT---NLVTVSSNATTTIITFRGPGV 296
GD+F+ YT+ L EPQP ++ +E
# Sbjct: 240 YGDVFVQYTVELREPQPSSNTMEEITGNAGNSVVTTPPSYFRLASFDATLAAFTPTTAGT 299
# Query: 297 YLLALSQRAASFT----TLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGT 351
+ A+ PG ++ +N T
# Sbjct: 300 YLVTLILEGTAMTAGNISTSNPSALTITGQSVVVSATKVIYVCQVIASTPGHNLNFNFT 358
# >gi||ref|NP_| coat protein [Johnsongrass chlorotic stripe mosaic virus]
Length = 364
222 bits (565), Expect = 8e-57
Identities = 115/228 (50%), Positives = 147/228 (64%), Gaps = 3/228 (1%)
# Query: 44
WVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQF 103
G +AAPVA +R IR+ KPKFT
KG V + HRE + Q
# Sbjct: 28
WNRLRKRMTNGGGVPMIVGSGGGTVAAPVAVSRQIRSRKPKFTSVKGQVRVTHREYVTQV 87
# Query: 104 NN-SSGLV-VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTET 161
IA++FDQY+F
+QL YVP+CATTE
# Sbjct: 88
SGVGSGLFQLNGGLPSGQFRVNPNNAACFPWLLSIASNFDQYRFVNLQLCYVPLCATTEV 147
# Query: 162 GRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKL 221
GRVA+++DKD
P +R ELANM H
E+ PW E +L VP DNVKR++ND+
# Sbjct: 148 GRVALFYDKDSGDSGPFERAELANMTHCAETPPWAEVSLTVPCDNVKRYLNDSNVTDLKL 207
# Query: 222 VDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAG 269
VD G+ G A Y GG+ N
GDLFI YT+ L EPQP A L+
# Sbjct: 208 VDAGRFGYAVY-GGNANTYGDLFIQYTVELSEPQPTAGLIGEVXGNAG 254
# >gi|9626977|ref|NP_| capsid protein [Melon necrotic spot virus]
Length = 390
212 bits (540), Expect = 7e-54
Identities = 134/369 (36%), Positives = 191/369 (51%), Gaps = 33/369 (8%)
# Query: 1
MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWVR------RKLGRSKK 54
MA+VKR NN+
# Sbjct: 1
MAMVKRINNLPTV-----KLAK----QALPLLANPKLVNKAIDVVPLVVQGGRKLSKAAK 51
# Query: 55
-------SDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSS 107
PGAI+APVA +R +
KP+F RS+GSV I HRE +
# Sbjct: 52
RLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFIASVLPSS 111
# Query: 108 GLVVNGG-VSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAI 166
+D Y+F R+++ Y+P
# Sbjct: 112 DLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGSTSTGRVSL 171
# Query: 167 YFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQ 226
+SAPW E+ L VP DN
# Sbjct: 172 LWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAVDRKLVDFGQ 231
# Query: 227 IGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATT 286
# Sbjct: 232 FLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGSTIKGVNYIADR 291
# Query: 287 TIITFRG--------PGVYLLALSQRAASFTTLVTAGGA--VVNSHTTLFSGPAYQSIAN 336
# Sbjct: 292 DVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLTSSGASALTFTL 351
# Query: 337 ITATIPGGS 345
# Sbjct: 352 NSTGVPNSS 360
# >gi||ref|NP_| coat protein [Hibiscus chlorotic ringspot virus]
Length = 345
155 bits (391), Expect = 1e-36
Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 13/281 (4%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNP 127
SVT+ H E +G
# Sbjct: 60
VTAPVAASMRTRNPGANIRTAGKSVTVVHCEFVGNIARQTG----SGLLVVERTINPSNV 115
# Query: 128 VVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMG 187
+ L+Y P CATT
G+V + FDKD
# Sbjct: 116 LSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADASPTSKSDMYNHD 175
# Query: 188 HWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG--GGSTNPVGDLFI 245
+ L +P DNV RF+ND++++D KLVD G++ +A YG
# Sbjct: 176 GAVGVSPWDSAMLQIPCDNVDRFINDSSSSDPKLVDFGKVVVANYGQSEGDVDVIGELFL 235
# Query: 246 HYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATTTIITFRGPGVYLLALSQRA 305
# Sbjct: 236 QYSITLKIPQGMAT---PTQSGVGISSVGPSLFRVQLRDDTHVFTCNGTGRFLFFFNSTV 292
# Query: 306 ASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSI 346
# Sbjct: 293 DATSTI--AGMEVKQKSSTDDKGET--TIMELLATESGGTI 329
# >gi||ref|NP_| coat protein [Pea stem necrosis virus]
Length = 351
154 bits (390), Expect = 2e-36
Identities = 86/243 (35%), Positives = 128/243 (52%), Gaps = 6/243 (2%)
# Query: 83
PKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGV-SGNLYRINPSNPVVFPWLQGIAASFD 141
S +++RINPSN
# Sbjct: 42
PCYHSRNSNTVVTHREYVTDVSNSSGVFVNNSSGSSSVFRINPSNTRVFNWLSSIAGSYD 101
# Query: 142 QYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLN 201
GR+ + +D D QDV
+E + W +S L
# Sbjct: 102 SYKFTRVRFTYVPYAGSNTPGRLYLGWDADSQDVIQPDRASLANFSPTSEDSVWTDSYLV 161
# Query: 202 VPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLV 261
+ RKLVDLGQ+ LAT+GG
G++++ Y++ L +PQP +
# Sbjct: 162 IPVDREWRFVDDTNISSRKLVDLGQLVLATWGGVDNTVCGEVYVEYSVELRQPQPPSGFV 221
# Query: 262 ETEQSGAG-----AAPFGTNLVTVSSNATTTIITFRGPGVYLLALSQRAASFTTLVTAGG 316
# Sbjct: 222 QVGRVDVPGILTFTGPAFVPASDLSISDTSFSFNLNTAGQYALSIDLQATTSGTLTVAGN 281
# Query: 317 AVV 319
# Sbjct: 282 CTL 284
# >gi||ref|NP_| p37K protein [Carnation ringspot virus]
Length = 345
149 bits (375), Expect = 9e-35
Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 16/308 (5%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGV-SGNLYRINPSN 126
KG + ++ R+L
VVN G+ + +L
# Sbjct: 28
VKIPYATTQIVTTSNPP---KKGQIKVSGRQLFMSLITSSSFVVNNGLPTPSLLSLNPSN 84
# Query: 127 PVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANM 186
AA++D Y+F +++L YV
T +GRV++ +D+D QDV P
# Sbjct: 85
QYLFPSLAYEAANYDLYRFAKLRLSYVHDTNATVSGRVSLMWDRDSQDVPPNSRVSIPQC 144
# Query: 187 GHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPVGDLFIH 246
+++P+D+V RF+ D
DRKL D GQI
A + G +T+ VGD+++
# Sbjct: 145 TKSVSTAVYESCAIDLPIDDVWRFVRDTDVVDRKLSDYGQIFTAVHSGSTTDEVGDVYLD 204
# Query: 247 YTITLFEPQPLASLVET---EQSGAGAAPFGTNLVTVSSNATTT----IITFRGPGVYLL 299
YTI L + QP AS+V+T
# Sbjct: 205 YTIELKDRQPTASMVQTAYWDVSGVLAKSEGPRYFSPSSDVTFTSTMAAISLQLSGIFNV 264
# Query: 300 ALSQRAASFTTLVTAGG-AVVNSHTTLFSGPAYQSIANITAT-IPGGSITYNGTLFG--- 354
+ F+ P Y +
T +P G+ + + T F
# Sbjct: 265 QVVVTCTTAGTLVVGPNISVIGAMYSQFTTPRYFAQPVLACTGVPNGTPSVSMTGFAGIT 324
# Query: 355 NYTLQVTR 362
# Sbjct: 325 RITLVITR 332
# >gi||ref|NP_| capsid protein [Red clover necrotic mosaic virus]
Length = 339
141 bits (355), Expect = 2e-32
Identities = 95/288 (32%), Positives = 138/288 (47%), Gaps = 16/288 (5%)
# Query: 61
PGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLY 120
+A P A T+II+
# Sbjct: 20
PNTSVKTVAIPFAKTQIIKTVNPPPKPARG---ILHTQLVMSVVGSVQMRTNNGKSNQRF 76
# Query: 121 RINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADR 180
R+NPSNP +FP L
+GRVA+ +D D QD
# Sbjct: 77
RLNPSNPALFPTLAYEAANYDMYRLKKLTLRYVPLVTVQNSGRVAMIWDPDSQDSAPQSR 136
# Query: 181 VELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNPV 240
+A + + +L +P DN
RF+ DNTT DRKLVD GQ+
# Sbjct: 137 QEISAYSRSVSTAVYEKCSLTIPADNQWRFVADNTTVDRKLVDFGQLLFVTHSGSDGIET 196
# Query: 241 GDLFIHYTITLFEPQPLASLVETE--QSGAGAAPFGTNLVTVSSNATTTIITF----RGP 294
# Sbjct: 197 GDIFLDCEVEFKGPQPTASIVQKTVIDLGGTLTSFEGPSYLMPPDAFITSSSFGLFVDVA 256
# Query: 295 GVYLLALSQRAASFTTLVTAGGAVVNSHTTLF-SGPAYQSIANITATI 341
# Sbjct: 257 GTYLLTL------VVTCSTTGSVTVGGNSTLVGDGRAAYGSSNYIASI 298
# >gi||ref|NP_| coat protein (p48) [Oat chlorotic stunt virus]
Length = 454
139 bits (351), Expect = 5e-32
Identities = 91/278 (32%), Positives = 135/278 (48%), Gaps = 24/278 (8%)
# Query: 64
LPGAIAAPVANTRII-RASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRI 122
AAPV+ +R I R SKP
+V I+H E+LG
# Sbjct: 109 LGGTTAAPVSISRNINRRSKPSIKMMGDAVVISHSEMLGAINSGTPSSNVTAFRCTGYRA 168
# Query: 123 NPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVE 182
A ++++YKF R+
+GR+ + FD D
# Sbjct: 169 NPGMSTIFPWLSATAVNYEKYKFRRLSFTLVPLVSTNYSGRIGVGFDYDSSDLVPGNRQE 228
# Query: 183 LANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGL---ATYGGGSTN- 238
E+ PW EST+ +
D KL+DLGQ+ +
# Sbjct: 229 FYALSNHCENMPWQESTVEIKCDNAYRFTGTHVAADNKLIDLGQVVVMSDSVSNGGTISA 288
# Query: 239 --PVGDLFIHYTITLFEPQPL---ASLVETEQSGAGAAPFGTNLVTV---------SSNA 284
P+ DL ++YT+ L EPQ
# Sbjct: 289 ALPLFDLIVNYTVELIEPQQALFSSQLYSGSTTFTSGIPLGTGADTTTVVGPTVVNSTTV 348
# Query: 285 TTTIITFRGP-GV----YLLALSQRAASFTTLVTAGGA 317
++TF+ P GV
# Sbjct: 349 TNCVVTFKLPAGVFEVSYFIAWSTGTAAVVPTVPTTGA 386
# >gi||ref|NP_| capsid protein [Sweet clover necrotic mosaic virus]
Length = 338
132 bits (333), Expect = 7e-30
Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 12/313 (3%)
# Query: 60
HPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNL 119
# Sbjct: 19
NPSTSVKTVTIPFAKTQIVKTVNPPPKPTKAAL---HTQLVLSVVGSIALRANNGKASQR 75
# Query: 120 YRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPAD 179
+R+NPSNP +FP +
+GRVA+ +D D QD
# Sbjct: 76
FRLNPSNPALFPTIAYEAANYDMYRMKKLTLRYVPLVTVQNSGRVAMIWDPDSQDSVPQS 135
# Query: 180 RVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTNP 239
+A + + +L +P DN
DRKLVD GQ+
# Sbjct: 136 RQEISAYSRSISTAVYEKCSLTIPADNQWRFVADSNVVDRKLVDYGQLLFVNHSGSEGIE 195
# Query: 240 VGDLFIHYTITLFEPQPLASLVE---TEQSG--AGAAPFGTNLVTVSSNATTTIITFRGP 294
# Sbjct: 196 TGDVFLECEVEFKGPQPTATVVQRGIIDRGGVLTGEGPSYLLPTDIVITATGISMNLDVA 255
# Query: 295 GVYLLALSQRAASFTTLVTAGGA-VVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLF 353
# Sbjct: 256 GTYLVTLVVTSSGSGNLQVLGNSTLVGDFRTAYSGINF--IATFVLTSTGVPSPTSSILF 313
# Query: 354 GNYTLQVTRAKIS 366
# Sbjct: 314 -NESTGVTRAQFS 325
# >gi|9634678|ref|NP_| capsid protein (p38) [Japanese iris necrotic ring virus]
Length = 352
123 bits (309), Expect = 4e-27
Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 12/310 (3%)
# Query: 58
ILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSG 117
# Sbjct: 51
IAQTGLRVNRVSQPISVSSRITTGEPRVTNVKRSMTVTFSEMIGVVRSHSSLSTESWV-- 108
# Query: 118 NLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEP 177
# Sbjct: 109 ----LNPSDIATFPQLSVSAAMYEKYRFTNLAFRFAPSCPTTTGGVVVLVHDPDSSDDLP 164
# Query: 178 ADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGST 237
RF+ DN T+D KL++ G++ +A YG G++
# Sbjct: 165 SDPTMLYEYSGAMRTSAYSPARLIVPTDGAARFVGDNHTSDPKLINFGKLIVANYGQGAS 224
# Query: 238 NP--VGDLFIHYTITLFEPQPLASLVETEQSGAGAAP-FGTNLVTVSSNATTTIITFRGP 294
+G++FI YT+ L + QP A
# Sbjct: 225 DPDMLGEIFIEYTVVLIDRQPSALSTQTLSAESSTGPKLLSRLVEGTKSPYTLTYSFNCG 284
# Query: 295 GVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITATIPGGSITYNGTLFG 354
# Sbjct: 285 GTFVVSLFYPIGPVSGPVSGSATIIRAYGDAQSQQA--QVITVRSPCRGGDFTLGLNSPG 342
# Query: 355 NY-TLQVTRA 363
# Sbjct: 343 DIPTAFVTRA 352
# >gi||ref|NP_| capsid [Cowpea mottle virus]
Length = 367
111 bits (278), Expect = 2e-23
Identities = 89/316 (28%), Positives = 147/316 (46%), Gaps = 28/316 (8%)
# Query: 71
PVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVF 130
# Sbjct: 54
PAATSTTITNGVPNYAVRQNKPVIQHVELWGTLMSNT----TESPAYITRTLNPSDPATF 109
# Query: 131 PWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWT 190
R ++ Y P CA T TG V + +D D
# Sbjct: 110 NWVQPLSTGYDMYRLVRCEIIYTPRCAVTTTGSVVLAYDPDASDVNPDNVTDLLNMAGAE 169
# Query: 191 ESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYG-GGSTNP--VGDLFIHY 247
+ R++ DN+T+D KLVD G+I +A+YG
# Sbjct: 170 SGSAYSPLSLVPNIKQIDRYIRDNSTSDPKLVDAGKILVASYGQQTSTAPFALGEIRFAY 229
# Query: 248 TITLFEPQPLASLVETEQSGAGAAPFG-------TNLVTVSSNATTTIITFRGPGVYLLA 300
# Sbjct: 230 TLQLIVPQPHSTGV---QRLGSAPPVGRACIRTLTSVVNTTSRLADYTLTLKTAGSYMIS 286
# Query: 301 LSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIA-NI---TATIPGGSITYNGTLFGNY 356
+ SG +Y S A N+
# Sbjct: 287 -AVDASSHTK------HKANQLWKVSSGRSYWSRATNVDIRSALKSGATITFEAATDSNA 339
# Query: 357 TLQVTRAKISNNATLI 372
# Sbjct: 340 EVYVVRDSGINDTIVV 355
# >gi|9629190|ref|NP_| capsid protein [Saguaro cactus virus]
Length = 344
109 bits (272), Expect = 8e-23
Identities = 90/314 (28%), Positives = 142/314 (45%), Gaps = 27/314 (8%)
# Query: 46
RRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNN 105
# Sbjct: 42
RSVLGLQNQPDVIVP--------VRPRATARVARPTRQGPGLAGKSMTITKCEYLSDIVS 93
# Query: 106 SSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVA 165
# Sbjct: 94
HVGTIP----LTDHWVVNPGTIKTFPQTSLMASQFNKYRLTALRVRYTSTCSFETSGRVA 149
# Query: 166 IYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLG 225
L +P DNV RF+ D+
# Sbjct: 150 IAFTNDSNDPLPTTKSQLYNFPVHIEAAATESKVLTIPCDNVYRFVRDDGVSDPKLVDFG 209
# Query: 226 QIGLATYGGGSTNP--VGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSN 283
+G+LFI YTI
# Sbjct: 210 RIVVCTYGSSAADPATLGELFIEYTIVFSDPTYTSSLT---QQGENQRSIGPRYATVDYE 266
# Query: 284 ATTTIITFRGPGVYLLA-LSQRAASFTTLVTAG--GAVVNSH------TTLFSGPAYQSI 334
# Sbjct: 267 STRWECQLQAAGRWLVCWVSDSAIPSPSIVGVGAKGKVLTSSDSKCGIATVIAQAPYCSI 326
# Query: 335 ANITATIPGGSITY 348
# Sbjct: 327 VSTTVSAP-SSLTW 339
# >gi|9633807|ref|NP_| coat protein [Carnation mottle virus]
Length = 348
108 bits (269), Expect = 2e-22
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 11/234 (4%)
# Query: 44
WVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKG----SVTIAHREL 99
# Sbjct: 33
WASLSTNQKRRAEMLA--GYTPAILAFTPRRPRMTNSPPRTSRNSPGQAGKSMTMSKTEL 90
# Query: 100 LGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATT 159
+ ++Y P C+
# Sbjct: 91
LCTVKGTTGVIP----SFEDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFE 146
# Query: 160 ETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDR 219
GRVA+ F+ D
RF+ D+ + D
# Sbjct: 147 TNGRVALGFNDDASDTPPTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDA 206
# Query: 220 KLVDLGQIGLATYGGGSTNP-VGDLFIHYTITLFEPQPLASLVETEQSGAGAAP 272
KLVD G++ L+TYG
VG+LFI YTI L +P
# Sbjct: 207 KLVDFGRLVLSTYGFDKADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGP 260
# >gi||ref|NP_| coat protein [Pelargonium flower break virus]
Length = 345
107 bits (267), Expect = 3e-22
Identities = 85/320 (26%), Positives = 143/320 (44%), Gaps = 23/320 (7%)
# Query: 39
WNGVNWVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKG-----SVT 93
# Sbjct: 29
WSSLTTQQKKAARSALS-VIQSPAVV-------VPRRTRVRNPVPAGLKSGNGKAGKSST 80
# Query: 94
IAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYV 153
# Sbjct: 81
LTRSEFICNVSSTTGVTP----TFQSWIINPREVKSFPQSSVCSVGYNKYRITDFRIRFS 136
# Query: 154 PMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMND 213
# Sbjct: 137 TSCSDTMNGKVAIGFTPDSSDPVPVDKSQLYGMQVYADTPAKESVTLKTAADNTIRFLRD 196
# Query: 214 NTTTDRKLVDLGQIGLATYGGGSTNP--VGDLFIHYTITLFEPQPLASLVETEQSGAGAA 271
+++ D KLVD G++ LATYG
# Sbjct: 197 SSSDDAKLVDYGRVVLATYGFDSTAPSVIGELFFEYTVVYLDPTYVVALT---QHGTLTT 253
# Query: 272 PFGTNLVTVSSNATTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAY 331
T+++ AT+T +
# Sbjct: 254 SSGPPYATLTTTATSTSMELNTHGKWLVVWVSADEVINSPVISGSGASGS-VTVVSDAQT 312
# Query: 332 QSIANITATIPGGSITYNGT 351
+A +TA +PG
# Sbjct: 313 TVVAVVTANLPGAIISNTST 332
# >gi||ref|NP_| coat protein [Turnip crinkle virus]
Length = 351
Score = 93.2 bits (230), Expect = 6e-18
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNP 127
+++P+ + ++
# Sbjct: 58
LSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYTTAV----LNPSEP 113
# Query: 128 VVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMG 187
G+VA+ FD+D
# Sbjct: 114 GTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPPNDLASLYNIE 173
# Query: 188 HWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATYGGGSTN--PVGDLFI 245
+D KLVD G++ +ATYG G+ +
# Sbjct: 174 GCVSSVPWTGFILTVPTDSTDRFVADG-ISDPKLVDFGKLIMATYGQGANDAAQLGEVRV 232
# Query: 246 HYTITL 251
# Sbjct: 233 EYTVQL 238
# >gi|9627424|ref|NP_| coat protein [Cardamine chlorotic fleck virus]
Length = 351
Score = 92.4 bits (228), Expect = 1e-17
Identities = 79/263 (30%), Positives = 120/263 (45%), Gaps = 24/263 (9%)
# Query: 76
RIIRASKPKFTRSKGSVTIAHRELLGQFN-NSSGLVVNGGVSGNLYR------------- 121
# Sbjct: 48
RVTKQPTPKVVRVSAPAAVSYREVTGAPRVTTAGKVLTHTASELITTLKKNTSLEPKYVE 107
# Query: 122 --INPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPAD 179
IAAS+++YKF
G+VA+ F++D
# Sbjct: 108 AIVNPSRVGTFNQLPDIAASYEKYKFTSLRFRYSSTCPTSTGGKVALAFERDAANPLPDN 167
# Query: 180 RVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDLGQIGLATY--GGGST 237
L VP DNV RF+ D
+D KLVD G++
# Sbjct: 168 LTAFYNLEGNTSSNPRDSFVLTVPCDNVARFVADG-GSDPKLVDFGKLLAASYGQGEGDA 226
# Query: 238 NPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVSSNATT--TIITFRGPG 295
N +G++ I YT+ L+
# Sbjct: 227 NGLGEIHIEYTVQLY--NRLGSAQRSQIGSLDGKFLGPRLVEVTSGKSDKGTKFTFSFHG 284
# Query: 296 VYLLALSQRAASFTTLVTAGGAV 318
# Sbjct: 285 CGLIPILWLAKPRWPL-TAGSAV 306
# >gi||ref|NP_| coat protein [Southern bean mosaic virus]
Length = 266
Score = 67.8 bits (164), Expect = 3e-10
Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 55/253 (21%)
# Query: 46
RRKLGRSKKSDVILHP-GVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFN 104
# Sbjct: 26
RRPRNRRRRRSAARQPQSTQAGVSMAPIAQGTMVRLREPSLRTAGGVTVLTHSELSTELS 85
# Query: 105 NSSGLVVNGGVSGNLYRINPSNPVVFP-----WLQGIAASFDQYKFDRVQLQYVPMCATT 159
WL+G+AA++ +Y
# Sbjct: 86
VTNAIVI-------------TSELVMPYTMGTWLRGVAANWSKYSLLSVRYTYLPSCPST 132
# Query: 160 ETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDR 219
# Sbjct: 133 TSGSIHMGFQYDMADTLPVSVNQLSNLRGYVSGQVWSGSSGLCYINGTRCLDTANAITTT 192
# Query: 220 KLVDLGQIG--------------------------------LATYGGGSTNPV--GDLFI 245
# Sbjct: 193 --LDVGQLGKKWYPFKTSTDFTTAVGVNVNIATPLVPARLIIAMLDGSSSTAVSTGRLYV 250
# Query: 246 HYTITLFEPQPLA 258
# Sbjct: 251 SYTIQLIEPTALA 263
# >gi||ref|NP_| coat protein [Sesbania mosaic virus]
Length = 268
Score = 63.9 bits (154), Expect = 4e-09
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
# Query: 46
RRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTI-AHRELLGQFN 104
# Sbjct: 28
RRRNRRRQRSAVQQLQPTQAGISMAPSAQGAMVRIRNPAVSSSRGGITVLTHSELSAEIG 87
# Query: 105 NSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRV 164
WL+G+AA++ +Y +
# Sbjct: 88
VTDSIVVSSEL------VMPYT--VGTWLRGVAANWSKYSWLSVRYTYIPSCPSSTAGSI 139
# Query: 165 AIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLVDL 224
# Sbjct: 140 HMGFQYDMADTVPVSVNQLSNLRGYVSGQVWSGSAGLCFINGTR--CSDTSTAISTTLDV 197
# Query: 225 GQIGLATY 232
# Sbjct: 198 SKLGKKWY 205
# >gi|9629187|ref|NP_| coat protein [Tobacco necrosis virus A]
Length = 276
Score = 59.3 bits (142), Expect = 9e-08
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 41/219 (18%)
# Query: 66
GAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPS 125
# Sbjct: 62
GYIVAPTSGGVVTRPIVPKFSNRGDSTIVRNTEIL-----------NNQILAALGAFNTT 110
# Query: 126 NPVVFP----WLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRV 181
++ Y+P C TT +G +A+ F
# Sbjct: 111 NSALIAAAPSWLASIADLYSKYRWLSCEIIYIPKCPTTTSGSIAMAFTYDRNDAAPTARA 170
# Query: 182 ELANM--------------GHWTESAPWCESTLNVPVDNVK-----------RFMNDNTT 216
# Sbjct: 171 QLSQSYKAINFPPYAGYDGAAYLNSNQGAGSAIAVQLDVTKLDKPWYPTISSAGFGALSV 230
# Query: 217 TDRKLVDLGQIGLATYGGGST-NPVGDLFIHYTITLFEP 254
+ +A+ GG +T
P GDLFI Y I
# Sbjct: 231 LDQNQFCPASLVVASDGGPATATPAGDLFIKYVIEFIEP 269
# >gi|9628595|ref|NP_| viral coat protein [Lucerne transient streak virus]
Length = 278
Score = 58.9 bits (141), Expect = 1e-07
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
# Query: 68
IAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNP 127
P A + ++R S P
# Sbjct: 35
VTIPAATSVVVRKSSPVIRSDRKGIQVCNTEFIRSFDLNASFTV-----GSL----PCTP 85
# Query: 128 VVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMG 187
+AAS+ ++K++ ++
# Sbjct: 86
GTMPWLSRMAASWGRWKWNSLRFTYIPAAPSNTQGTVAMGFLYDSLDSLPSNLASMSSLD 145
# Query: 188 HWTESAPW--CEST 199
# Sbjct: 146 GFTTGAVWSGCEGS 159
# >gi|9627903|ref|NP_| coat protein [Southern cowpea mosaic virus]
Length = 279
Score = 55.8 bits (133), Expect = 1e-06
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 40/240 (16%)
# Query: 47
RKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNS 106
# Sbjct: 41
RRKRRAKRRAAQVPKPTQAGVSMAPIAQGTMVKLRPPMLRSSMDVTILSHCELSTELAVT 100
# Query: 107 SGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAI 166
WL+G+A ++ +Y +
Y+P C TT +G + +
# Sbjct: 101 DTIVVTSEL------VMPFT--VGTWLRGVAQNWSKYAWVAIRYTYLPSCPTTTSGAIHM 152
# Query: 167 YFDKDQQDVEPADRVELANMGHWTESAPW-------------CEST---LNVPVD----N 206
# Sbjct: 153 GFQYDMADTLPVSVNQLSNLKGYVTGPVWEGQSGLCFVNNTKCPDTSRAITIALDTNEVS 212
# Query: 207 VKRF----MNDNTTTDRKLVDLGQI------GLATYGGGSTNPV--GDLFIHYTITLFEP 254
# Sbjct: 213 EKRYPFKTATDYATAVGVNANIGNILVPARLVIAMEGGSSKTAVNTGRLYASYTIRLIEP 272
# >gi||ref|NP_| coat protein [Subterranean clover mottle virus]
Length = 253
Score = 53.9 bits (128), Expect = 4e-06
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
# Query: 71
PVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVF 130
# Sbjct: 44
PMASTVVIGRSFPAIHSEGTRTRVCHTELIRAVDINTIFTLN---------FTWCIPSAF 94
# Query: 131 PWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWT 190
PWL G+A ++ ++++
# Sbjct: 95
PWLSGVAVNWSKWRWVSLRFTYMPAAATTTQGTVALGYLYDALDAVPAALQQMSSLAGFS 154
# Query: 191 ESAPWCES 198
# Sbjct: 155 TGAVWSGS 162
# >gi||ref|NP_| coat protein [Beet black scorch virus]
Length = 232
Score = 53.5 bits (127), Expect = 5e-06
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
# Query: 124 PSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVEL 183
WL GIA+++ ++++
# Sbjct: 73
PSN---LGWLNGIASNYSKFRWLAIKLIYIPIVPTTTAGAMTMALTYDPADATPTSFQQV 129
# Query: 184 ANMGHWTESAPWC-------------ESTLNVPVD-NVKRF------------MNDNTTT 217
V +D +V RF
# Sbjct: 130 QQMYNSITAPVWAGFDGATVQLLGERPTTGAVCIDVDVNRFGFTWYRYATLAAITALTAN 189
# Query: 218 DRKLVDLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLA 258
VG+L I Y+I L EP P A
# Sbjct: 190 DRNLYIPSVGNVATSGGTAATNVGNLMIKYSIELIEPIPAA 230
# >gi|9628879|ref|NP_| capsid protein [Olive latent virus 1]
Length = 270
Score = 52.4 bits (124), Expect = 1e-05
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
# Query: 63
VLPGAIAAPVANTRI-IRASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYR 121
# Sbjct: 54
VLP--VIAPVAGGVISTEGHVPRITTTNEQTVVRNTEIISAINSAA----LGAIFGNYVT 107
# Query: 122 INPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRV 181
+ +Y++ +++
# Sbjct: 108 VIPSN---LSWLAGLSDLYSKYRWRKLRFIYLPVCPTSTQGNVSMSLSFDRIDTQPTSIT 164
# Query: 182 EL 183
# Sbjct: 165 QM 166
# >gi||ref|NP_| coat protein [Sclerophthora macrospora virus A]
Length = 422
Score = 50.4 bits (119), Expect = 4e-05
Identities = 65/245 (26%), Positives = 96/245 (39%), Gaps = 43/245 (17%)
# Query: 74
NTRIIRASK--PKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFP 131
+ + HRE + +
# Sbjct: 77
NSLVSRASTSIPMMHKADQKIMVRHREFVMEVRSAINFSVQ-----RTFPLNPGMSQSFP 131
# Query: 132 WLQGIAASFDQYKFDRVQLQYVPMCAT------TETGRVAIYFDKDQQDVEPADRVELAN 185
# Sbjct: 132 WLAKLASSFQQYSIKGMVFHYVPTSGSAISGTNNALGSIMLQTSYRANDSTPQSKVECLN 191
# Query: 186 MGHWTESAPWCESTLNVPVD-NVKR--FMNDNTTT-------DRKLVDLGQIGLATYG-- 233
# Sbjct: 192 EYWACESVP--SETFAHPIECNPKENPFQVQYIRTGAVPAGDNVLLYDLGLTSIAVSGCQ 249
# Query: 234 -GGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVS-SNATTTIITF 291
+GDL++ Y + L +P
# Sbjct: 250 VDGVT--LGDLWVTYEVELSKP-IMDSTAVTQQ-----------LVTASWINANVVTATY 295
# Query: 292 RGPGV 296
# Sbjct: 296 LGTGV 300
# >gi||ref|NP_| coat protein [Turnip rosette virus]
Length = 255
Score = 46.2 bits (108), Expect = 8e-04
Identities = 37/175 (21%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
# Query: 30
LSPAGRELIWNGVNWVRRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFT--R 87
+S +++ ++ P
# Sbjct: 1
MEKGNKKLTKNQRRKTRKKSSQSGRTNSVVTP------LWAPVSTGTVMQGGALSISSLN 54
# Query: 88
SKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSNPVVFPW-LQGIAASFDQYKFD 146
L+G+A S+ ++K+
# Sbjct: 55
NKGDIRVCGREVVTEIS------VSNTPTPSVLQVIPET---FPSRLKGLATSWSKFKWQ 105
# Query: 147 RVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLN 201
Y+ +C TTE G V
# Sbjct: 106 AIKFVYMSICPTTERGSVHFGFLYDTVDNLPGTVGEISTLQGYTTGSVWAGTSGN 160
# >gi||ref|NP_| 29 kDa coat protein [Tobacco necrosis virus D]
Length = 268
Score = 43.5 bits (101), Expect = 0.005
Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 34/214 (15%)
# Query: 68
IAAPVANTRII-RASKPKFTRSKGSVTIAHRELLGQFNNSSGLVVNGGVSGNLYRINPSN 126
# Sbjct: 55
LTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANIT----LAAAGAFS---FTTQPLI 107
# Query: 127 PVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELAN- 185
+ Y+P C T+
# Sbjct: 108 PSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQVSQC 167
# Query: 186 -----------------MGHWTESAPWCESTLNVPVDNVKRF--MNDNTTTDRKLVDLGQ 226
# Sbjct: 168 YQSITFPPYAGYGGASALNHKGSSGESLVSTLDTNRVDKKWYSTIGNAAFTALTSIDKNQ 227
# Query: 227 IGLATY------GGGSTNPVGDLFIHYTITLFEP 254
VGD+F+ Y I
# Sbjct: 228 FCPATAIIAGDGGPVAATAVGDIFMRYEIEFIEP 261
# >gi|9629523|ref|NP_| capsid protein [Leek white stripe virus]
Length = 251
Score = 38.1 bits (87), Expect = 0.22
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 45/239 (18%)
# Query: 51
RSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTI-AHRELLGQFNNSS-- 107
++ SV + +H EL
# Sbjct: 26
QSRKGQMVLQ------TIVEPSARGSIYRNVIPPGIFNRDSVNLLSHTELFVGVDSGALG 79
# Query: 108 GLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIY 167
# Sbjct: 80
AFVLNGGA------IIPSQMTN---CNRHAVNFSKYSWKYLEFIYIPFVATTFPGQVVLA 130
# Query: 168 FDKDQQDVEPADRVELANMGHWTESAPW-------------CESTLNVPV--DNVKRFMN 212
# Sbjct: 131 PNFDRSDANPTSIASLEQYDYAVSTPIWGGSEGSRRMHSNAACSAVNVIIETDNFDKVVY 190
# Query: 213 DNTT---------TDRKLVDLGQIGLATYGGGSTN---PVGDLFIHYTITLFEPQPLAS 259
+ +AT GG +
# Sbjct: 191 PYKTLANFTGLPAVDQNIFAPATMFVATQGGNNVAIQLSVGKLYCKYVIEFFNPIDPAS 249
# >gi||ref|NP_| 26 kDa capsid protein [Panicum mosaic virus]
Length = 242
Score = 33.9 bits (76), Expect = 4.2
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
# Query: 69
AAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFNNSSGL--VVNGGVSGNLYRINPSN 126
++H E++ Q N+S+
# Sbjct: 34
STPLQYVTTLGPSRPRMGQGQGWQKLSHEEIILQVNSSTAADTIQTIPIIPRLSVPAGDK 93
# Query: 127 PVVF---PWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVEL 183
P L+ I ++F
# Sbjct: 94
PIYSGSAPHLRTIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDL 153
# >gi||ref|NP_| CP readthrough product [Soybean dwarf virus]
Length = 722
Score = 33.5 bits (75), Expect = 5.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
# Query: 111 VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFD 169
# Sbjct: 72
INGSSKGSI-TFGPSLSECKPFSDGILKAYHEYKITSILLQFITEASSTSSGSIAYELD 129
# >gi||ref|NP_| coat protein [Soybean dwarf virus]
Length = 200
Score = 33.5 bits (75), Expect = 5.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
# Query: 111 VNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFD 169
# Sbjct: 72
INGSSKGSI-TFGPSLSECKPFSDGILKAYHEYKITSILLQFITEASSTSSGSIAYELD 129
Database: SSRNAp
Posted date:
Number of letters in database: 1,206,368
Number of sequences in database:
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 863,843
Number of Sequences: 2912
Number of extensions: 37475
Number of successful extensions: 204
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 43
length of query: 372
length of database: 270,000,000
effective HSP length: 124
effective length of query: 248
effective length of database: 270,000,000
effective search space:
effective search space used:
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
S2: 73 (32.7 bits)}
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